Strain Fitness in Shewanella amazonensis SB2B around Sama_1991

Experiment: L-Serine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Serine (N)
2,420,800	-		Sama_1990	0.48	-0.5
2,420,998	-		Sama_1990	0.61	-0.9
2,420,998	-		Sama_1990	0.61	+0.4
2,421,025	+		Sama_1990	0.63	+0.3
2,421,088	+		Sama_1990	0.67	+1.4
2,421,088	+		Sama_1990	0.67	-1.5
2,421,214	-		Sama_1990	0.75	-0.1
2,421,304	+		Sama_1990	0.80	-1.1
2,421,304	+		Sama_1990	0.80	-0.3
2,421,311	+		Sama_1990	0.81	+2.7
2,421,312	-		Sama_1990	0.81	-0.9
2,421,312	-		Sama_1990	0.81	-0.9
2,421,312	-		Sama_1990	0.81	-0.4
2,421,312	-		Sama_1990	0.81	-0.1
2,421,312	-		Sama_1990	0.81	-2.6
2,421,447	+		Sama_1990	0.90	+0.1
2,421,447	+		Sama_1990	0.90	-0.5
2,421,468	-				-0.9
2,421,472	+				-0.7
2,421,472	+				+0.0
2,421,473	-				-0.4
2,421,673	+				+0.2
2,421,673	+				+0.4
2,421,674	-				+0.1
2,421,747	+				+0.3
2,421,748	-				-0.5
2,421,748	-				-1.4
2,421,748	-				-0.1
2,421,775	-		Sama_1991	0.10	+1.1
2,421,786	+		Sama_1991	0.11	-0.8
2,421,786	+		Sama_1991	0.11	-0.6
2,421,907	+		Sama_1991	0.24	+0.7
2,421,908	-		Sama_1991	0.25	-1.9
2,421,908	-		Sama_1991	0.25	+1.7
2,421,908	-		Sama_1991	0.25	-0.3
2,421,908	-		Sama_1991	0.25	+0.2
2,421,908	-		Sama_1991	0.25	+0.9
2,421,908	-		Sama_1991	0.25	-1.3
2,421,918	-		Sama_1991	0.26	+0.1
2,421,918	-		Sama_1991	0.26	+1.4
2,422,063	+		Sama_1991	0.41	-0.4
2,422,064	-		Sama_1991	0.41	+0.3
2,422,064	-		Sama_1991	0.41	-1.9
2,422,064	-		Sama_1991	0.41	-0.1
2,422,064	-		Sama_1991	0.41	-1.1
2,422,231	+		Sama_1991	0.59	-0.4
2,422,267	+		Sama_1991	0.63	-0.8
2,422,315	+		Sama_1991	0.68	-0.1
2,422,320	+		Sama_1991	0.69	-0.8
2,422,321	-		Sama_1991	0.69	-1.7
2,422,334	+		Sama_1991	0.70	+0.3
2,422,335	-		Sama_1991	0.70	-0.3
2,422,335	-		Sama_1991	0.70	-0.4
2,422,335	-		Sama_1991	0.70	-0.6
2,422,335	-		Sama_1991	0.70	+0.9
2,422,335	-		Sama_1991	0.70	+4.5
2,422,335	-		Sama_1991	0.70	-0.8
2,422,335	-		Sama_1991	0.70	-1.3
2,422,335	-		Sama_1991	0.70	+0.8
2,422,400	-		Sama_1991	0.77	-1.9
2,422,476	-		Sama_1991	0.86	-0.6
2,422,476	-		Sama_1991	0.86	-1.9
2,422,476	-		Sama_1991	0.86	-0.9
2,422,479	+		Sama_1991	0.86	-1.2
2,422,479	+		Sama_1991	0.86	+1.3
2,422,480	-		Sama_1991	0.86	+1.1
2,422,480	-		Sama_1991	0.86	-0.2
2,422,480	-		Sama_1991	0.86	-0.6
2,422,525	+				+0.1
2,422,526	-				+1.1
2,422,533	+				+1.2
2,422,534	-				-1.9
2,422,534	-				-0.7
2,422,534	-				-1.1
2,422,534	-				+0.1
2,422,536	+				+4.0
2,422,537	-				-0.2
2,422,537	-				-0.6
2,422,537	-				-1.3
2,422,578	-				-0.1
2,422,578	-				-0.7
2,422,578	-				-0.0
2,422,578	-				-2.3
2,422,578	-				+1.5
2,422,582	-				-0.0
2,422,614	-				+0.4
2,422,614	-				+1.4
2,422,664	+				-0.4
2,422,664	+				-0.1
2,422,665	-				-2.4
2,422,665	-				+0.8
2,422,665	-				-0.1
2,422,666	+				+0.4
2,422,666	+				-2.1
2,422,666	+				-0.1
2,422,666	+				+0.4
2,422,666	+				+1.8
2,422,667	-				+2.3
2,422,667	-				+0.0
2,422,667	-				-0.3
2,422,667	-				+0.3
2,422,667	-				-0.3
2,422,667	-				+1.9
2,422,667	-				+0.2
2,422,690	+				-0.2
2,422,696	-				-2.3
2,422,700	-				+0.3
2,422,744	+				+0.3
2,422,745	-				-0.3
2,422,745	-				-0.3
2,422,763	-				+0.1
2,422,763	-				+0.6
2,422,786	-				-1.1
2,422,803	+				-2.3
2,422,804	-				+1.0
2,422,810	+				-1.0
2,422,811	-				-0.5
2,422,858	-				-1.2
2,422,872	-				-1.0
2,422,915	+		Sama_1992	0.15	-1.1
2,422,916	-		Sama_1992	0.15	-1.1
2,422,916	-		Sama_1992	0.15	-1.1
2,422,916	-		Sama_1992	0.15	+0.3
2,422,917	+		Sama_1992	0.15	-0.6
2,422,927	+		Sama_1992	0.16	-2.1
2,422,928	-		Sama_1992	0.17	+0.0
2,423,033	+		Sama_1992	0.29	-0.1
2,423,034	-		Sama_1992	0.29	+0.0
2,423,034	-		Sama_1992	0.29	+0.1
2,423,034	-		Sama_1992	0.29	-0.7
2,423,034	-		Sama_1992	0.29	-0.5
2,423,042	+		Sama_1992	0.30	-0.3
2,423,043	-		Sama_1992	0.30	-0.9
2,423,050	+		Sama_1992	0.31	-2.7
2,423,051	-		Sama_1992	0.31	-0.5
2,423,053	+		Sama_1992	0.31	-0.0
2,423,053	+		Sama_1992	0.31	+4.4
2,423,054	-		Sama_1992	0.32	+0.1
2,423,054	-		Sama_1992	0.32	+0.3
2,423,076	+		Sama_1992	0.34	-1.3
2,423,077	-		Sama_1992	0.34	-0.6
2,423,077	-		Sama_1992	0.34	-0.3
2,423,110	+		Sama_1992	0.38	+1.8
2,423,111	-		Sama_1992	0.38	+0.0
2,423,111	-		Sama_1992	0.38	+1.2
2,423,113	+		Sama_1992	0.39	-0.6
2,423,113	+		Sama_1992	0.39	+1.4
2,423,113	+		Sama_1992	0.39	+0.7
2,423,113	+		Sama_1992	0.39	-0.3
2,423,114	-		Sama_1992	0.39	-1.0
2,423,216	+		Sama_1992	0.51	-2.2
2,423,217	-		Sama_1992	0.51	+1.9
2,423,217	-		Sama_1992	0.51	-1.4
2,423,217	-		Sama_1992	0.51	+2.9
2,423,217	-		Sama_1992	0.51	-2.4
2,423,217	-		Sama_1992	0.51	-0.8
2,423,217	-		Sama_1992	0.51	+0.1
2,423,326	-		Sama_1992	0.64	-1.1
2,423,363	+		Sama_1992	0.68	-2.1
2,423,364	-		Sama_1992	0.68	-0.8
2,423,379	+		Sama_1992	0.70	+1.3
2,423,459	-		Sama_1992	0.80	-0.3
2,423,483	+		Sama_1992	0.83	-0.7
2,423,540	+		Sama_1992	0.89	-0.5
2,423,575	+				-1.8
2,423,576	-				+1.4
2,423,590	+				+0.1
2,423,590	+				+0.6
2,423,591	-				+0.0
2,423,591	-				+0.2
2,423,591	-				+2.2