Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0558 and Sama_0559 are separated by 121 nucleotides Sama_0559 and Sama_0560 are separated by 457 nucleotides
Sama_0558: Sama_0558 - hypothetical protein (RefSeq), at 693,651 to 694,433
_0558
Sama_0559: Sama_0559 - hypothetical protein (RefSeq), at 694,555 to 695,007
_0559
Sama_0560: Sama_0560 - D-mannose isomerase (EC 5.3.1.7) <small>(from data)</small>, at 695,465 to 696,634
_0560
Position (kb) 694
695
696 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 693.618 kb on - strand at 693.618 kb on - strand at 693.633 kb on + strand at 693.633 kb on + strand at 693.634 kb on - strand at 693.636 kb on + strand at 693.636 kb on + strand at 693.636 kb on + strand at 693.637 kb on - strand at 693.662 kb on + strand at 693.662 kb on + strand at 693.662 kb on + strand at 693.662 kb on + strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.666 kb on - strand at 693.740 kb on + strand, within Sama_0558 at 693.740 kb on + strand, within Sama_0558 at 693.740 kb on + strand, within Sama_0558 at 693.740 kb on + strand, within Sama_0558 at 693.740 kb on + strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.752 kb on - strand, within Sama_0558 at 693.871 kb on + strand, within Sama_0558 at 693.945 kb on + strand, within Sama_0558 at 693.946 kb on - strand, within Sama_0558 at 693.989 kb on - strand, within Sama_0558 at 693.994 kb on + strand, within Sama_0558 at 693.995 kb on - strand, within Sama_0558 at 694.006 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.013 kb on - strand, within Sama_0558 at 694.013 kb on - strand, within Sama_0558 at 694.013 kb on - strand, within Sama_0558 at 694.013 kb on - strand, within Sama_0558 at 694.030 kb on + strand, within Sama_0558 at 694.030 kb on + strand, within Sama_0558 at 694.031 kb on - strand, within Sama_0558 at 694.031 kb on - strand, within Sama_0558 at 694.031 kb on - strand, within Sama_0558 at 694.031 kb on - strand, within Sama_0558 at 694.091 kb on - strand, within Sama_0558 at 694.091 kb on - strand, within Sama_0558 at 694.132 kb on + strand, within Sama_0558 at 694.132 kb on + strand, within Sama_0558 at 694.133 kb on - strand, within Sama_0558 at 694.133 kb on - strand, within Sama_0558 at 694.133 kb on - strand, within Sama_0558 at 694.217 kb on + strand, within Sama_0558 at 694.218 kb on - strand, within Sama_0558 at 694.218 kb on - strand, within Sama_0558 at 694.233 kb on + strand, within Sama_0558 at 694.234 kb on - strand, within Sama_0558 at 694.252 kb on + strand, within Sama_0558 at 694.253 kb on - strand, within Sama_0558 at 694.368 kb on - strand at 694.403 kb on - strand at 694.403 kb on - strand at 694.470 kb on - strand at 694.470 kb on - strand at 694.470 kb on - strand at 694.470 kb on - strand at 694.556 kb on + strand at 694.556 kb on + strand at 694.557 kb on - strand at 694.568 kb on + strand at 694.602 kb on + strand, within Sama_0559 at 694.602 kb on + strand, within Sama_0559 at 694.603 kb on - strand, within Sama_0559 at 694.603 kb on - strand, within Sama_0559 at 694.633 kb on + strand, within Sama_0559 at 694.633 kb on + strand, within Sama_0559 at 694.633 kb on + strand, within Sama_0559 at 694.633 kb on + strand, within Sama_0559 at 694.634 kb on - strand, within Sama_0559 at 694.634 kb on - strand, within Sama_0559 at 694.634 kb on - strand, within Sama_0559 at 694.634 kb on - strand, within Sama_0559 at 694.634 kb on - strand, within Sama_0559 at 694.637 kb on + strand, within Sama_0559 at 694.637 kb on + strand, within Sama_0559 at 694.637 kb on + strand, within Sama_0559 at 694.638 kb on - strand, within Sama_0559 at 694.638 kb on - strand, within Sama_0559 at 694.638 kb on - strand, within Sama_0559 at 694.638 kb on - strand, within Sama_0559 at 694.716 kb on + strand, within Sama_0559 at 694.749 kb on - strand, within Sama_0559 at 694.796 kb on + strand, within Sama_0559 at 694.797 kb on - strand, within Sama_0559 at 694.797 kb on - strand, within Sama_0559 at 694.797 kb on - strand, within Sama_0559 at 694.864 kb on + strand, within Sama_0559 at 694.865 kb on - strand, within Sama_0559 at 694.916 kb on - strand, within Sama_0559 at 694.963 kb on - strand at 694.970 kb on + strand at 694.970 kb on + strand at 694.970 kb on + strand at 694.970 kb on + strand at 694.971 kb on - strand at 694.971 kb on - strand at 694.981 kb on - strand at 694.982 kb on + strand at 694.982 kb on + strand at 694.982 kb on + strand at 694.982 kb on + strand at 694.982 kb on + strand at 694.982 kb on + strand at 694.983 kb on - strand at 694.983 kb on - strand at 694.983 kb on - strand at 694.983 kb on - strand at 694.983 kb on - strand at 694.983 kb on - strand at 694.983 kb on - strand at 695.055 kb on + strand at 695.056 kb on - strand at 695.056 kb on - strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.166 kb on + strand at 695.187 kb on + strand at 695.188 kb on - strand at 695.198 kb on - strand at 695.277 kb on + strand at 695.277 kb on + strand at 695.277 kb on + strand at 695.278 kb on - strand at 695.281 kb on + strand at 695.282 kb on - strand at 695.320 kb on + strand at 695.358 kb on + strand at 695.434 kb on + strand at 695.434 kb on + strand at 695.434 kb on + strand at 695.438 kb on - strand at 695.438 kb on - strand at 695.440 kb on - strand at 695.466 kb on + strand at 695.466 kb on + strand at 695.471 kb on + strand at 695.472 kb on - strand at 695.472 kb on - strand at 695.511 kb on + strand at 695.511 kb on + strand at 695.511 kb on + strand at 695.511 kb on + strand at 695.511 kb on + strand at 695.512 kb on - strand at 695.512 kb on - strand at 695.512 kb on - strand at 695.550 kb on + strand at 695.551 kb on - strand at 695.551 kb on - strand at 695.551 kb on - strand at 695.622 kb on + strand, within Sama_0560 at 695.622 kb on + strand, within Sama_0560 at 695.623 kb on - strand, within Sama_0560 at 695.623 kb on - strand, within Sama_0560 at 695.640 kb on + strand, within Sama_0560 at 695.640 kb on + strand, within Sama_0560 at 695.641 kb on - strand, within Sama_0560 at 695.641 kb on - strand, within Sama_0560 at 695.641 kb on - strand, within Sama_0560 at 695.676 kb on + strand, within Sama_0560 at 695.676 kb on + strand, within Sama_0560 at 695.676 kb on + strand, within Sama_0560 at 695.677 kb on - strand, within Sama_0560 at 695.677 kb on - strand, within Sama_0560 at 695.677 kb on - strand, within Sama_0560 at 695.677 kb on - strand, within Sama_0560 at 695.721 kb on + strand, within Sama_0560 at 695.721 kb on + strand, within Sama_0560 at 695.721 kb on + strand, within Sama_0560 at 695.722 kb on - strand, within Sama_0560 at 695.722 kb on - strand, within Sama_0560 at 695.722 kb on - strand, within Sama_0560 at 695.722 kb on - strand, within Sama_0560 at 695.722 kb on - strand, within Sama_0560 at 695.722 kb on - strand, within Sama_0560 at 695.722 kb on - strand, within Sama_0560 at 695.722 kb on - strand, within Sama_0560 at 695.725 kb on + strand, within Sama_0560 at 695.725 kb on + strand, within Sama_0560 at 695.725 kb on + strand, within Sama_0560 at 695.725 kb on + strand, within Sama_0560 at 695.726 kb on - strand, within Sama_0560 at 695.726 kb on - strand, within Sama_0560 at 695.726 kb on - strand, within Sama_0560 at 695.726 kb on - strand, within Sama_0560 at 695.763 kb on + strand, within Sama_0560 at 695.763 kb on + strand, within Sama_0560 at 695.763 kb on + strand, within Sama_0560 at 695.763 kb on + strand, within Sama_0560 at 695.764 kb on - strand, within Sama_0560 at 695.764 kb on - strand, within Sama_0560 at 695.764 kb on - strand, within Sama_0560 at 695.764 kb on - strand, within Sama_0560 at 695.835 kb on - strand, within Sama_0560 at 695.952 kb on + strand, within Sama_0560 at 695.952 kb on + strand, within Sama_0560 at 695.952 kb on + strand, within Sama_0560 at 695.981 kb on - strand, within Sama_0560
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 693,618 - -0.5 693,618 - -1.9 693,633 + -0.0 693,633 + -1.2 693,634 - +2.5 693,636 + -0.8 693,636 + -0.4 693,636 + -0.2 693,637 - +0.4 693,662 + -0.2 693,662 + +1.5 693,662 + +0.4 693,662 + +0.5 693,663 - +0.2 693,663 - -2.7 693,663 - +0.9 693,663 - +0.6 693,663 - -1.0 693,663 - -0.8 693,666 - +0.2 693,740 + Sama_0558 0.11 -1.9 693,740 + Sama_0558 0.11 -1.5 693,740 + Sama_0558 0.11 -1.9 693,740 + Sama_0558 0.11 -1.3 693,740 + Sama_0558 0.11 +2.3 693,741 - Sama_0558 0.11 +0.5 693,741 - Sama_0558 0.11 -0.5 693,741 - Sama_0558 0.11 -0.3 693,741 - Sama_0558 0.11 -0.9 693,741 - Sama_0558 0.11 -0.5 693,741 - Sama_0558 0.11 -0.4 693,741 - Sama_0558 0.11 -0.8 693,741 - Sama_0558 0.11 +0.2 693,752 - Sama_0558 0.13 +1.1 693,871 + Sama_0558 0.28 +3.8 693,945 + Sama_0558 0.38 -1.0 693,946 - Sama_0558 0.38 +0.0 693,989 - Sama_0558 0.43 +0.0 693,994 + Sama_0558 0.44 +0.3 693,995 - Sama_0558 0.44 +0.7 694,006 + Sama_0558 0.45 +0.2 694,012 + Sama_0558 0.46 -2.0 694,012 + Sama_0558 0.46 -0.8 694,012 + Sama_0558 0.46 -0.7 694,012 + Sama_0558 0.46 +0.8 694,012 + Sama_0558 0.46 -1.2 694,012 + Sama_0558 0.46 -0.6 694,012 + Sama_0558 0.46 +0.8 694,013 - Sama_0558 0.46 +0.6 694,013 - Sama_0558 0.46 -1.1 694,013 - Sama_0558 0.46 +2.9 694,013 - Sama_0558 0.46 +3.4 694,030 + Sama_0558 0.48 +0.2 694,030 + Sama_0558 0.48 -1.5 694,031 - Sama_0558 0.49 +0.5 694,031 - Sama_0558 0.49 +1.2 694,031 - Sama_0558 0.49 -1.9 694,031 - Sama_0558 0.49 -1.1 694,091 - Sama_0558 0.56 -0.1 694,091 - Sama_0558 0.56 -0.8 694,132 + Sama_0558 0.61 -1.4 694,132 + Sama_0558 0.61 +1.5 694,133 - Sama_0558 0.62 +2.3 694,133 - Sama_0558 0.62 -0.2 694,133 - Sama_0558 0.62 -1.9 694,217 + Sama_0558 0.72 +3.2 694,218 - Sama_0558 0.72 +0.2 694,218 - Sama_0558 0.72 +1.3 694,233 + Sama_0558 0.74 -1.0 694,234 - Sama_0558 0.74 -0.8 694,252 + Sama_0558 0.77 +0.7 694,253 - Sama_0558 0.77 -3.0 694,368 - -1.0 694,403 - +0.2 694,403 - -0.1 694,470 - +0.4 694,470 - +0.3 694,470 - -0.6 694,470 - -0.6 694,556 + +0.3 694,556 + +0.4 694,557 - -0.3 694,568 + +0.1 694,602 + Sama_0559 0.10 -1.0 694,602 + Sama_0559 0.10 -0.8 694,603 - Sama_0559 0.11 +1.3 694,603 - Sama_0559 0.11 +0.4 694,633 + Sama_0559 0.17 -2.7 694,633 + Sama_0559 0.17 +0.6 694,633 + Sama_0559 0.17 -0.7 694,633 + Sama_0559 0.17 -0.6 694,634 - Sama_0559 0.17 +0.7 694,634 - Sama_0559 0.17 -0.9 694,634 - Sama_0559 0.17 -0.7 694,634 - Sama_0559 0.17 -0.1 694,634 - Sama_0559 0.17 -0.8 694,637 + Sama_0559 0.18 +0.6 694,637 + Sama_0559 0.18 -0.7 694,637 + Sama_0559 0.18 -0.7 694,638 - Sama_0559 0.18 +0.2 694,638 - Sama_0559 0.18 -0.5 694,638 - Sama_0559 0.18 +0.5 694,638 - Sama_0559 0.18 +1.3 694,716 + Sama_0559 0.36 -0.3 694,749 - Sama_0559 0.43 +1.1 694,796 + Sama_0559 0.53 +0.7 694,797 - Sama_0559 0.53 -0.2 694,797 - Sama_0559 0.53 -1.6 694,797 - Sama_0559 0.53 -0.4 694,864 + Sama_0559 0.68 -1.4 694,865 - Sama_0559 0.68 -0.3 694,916 - Sama_0559 0.80 +0.1 694,963 - -1.3 694,970 + +1.4 694,970 + -0.0 694,970 + +0.6 694,970 + -0.2 694,971 - +0.7 694,971 - +0.0 694,981 - -0.1 694,982 + +0.5 694,982 + -1.0 694,982 + -0.4 694,982 + -1.2 694,982 + +0.5 694,982 + +0.4 694,983 - -1.5 694,983 - +0.4 694,983 - +0.4 694,983 - -0.7 694,983 - -1.1 694,983 - -1.4 694,983 - +1.1 695,055 + -0.6 695,056 - -0.5 695,056 - -1.1 695,061 + +0.7 695,061 + +0.2 695,061 + -2.2 695,061 + -0.3 695,061 + +0.4 695,061 + +0.1 695,061 + -0.3 695,061 + -0.3 695,061 + +0.3 695,061 + -0.8 695,062 - -1.6 695,062 - +2.4 695,062 - -0.0 695,062 - +1.4 695,062 - +0.1 695,062 - -1.0 695,062 - -1.4 695,062 - +2.6 695,062 - +0.2 695,166 + +0.4 695,187 + +0.3 695,188 - +1.3 695,198 - +1.2 695,277 + -1.5 695,277 + +1.2 695,277 + -1.7 695,278 - -1.2 695,281 + +0.3 695,282 - -2.0 695,320 + -0.2 695,358 + -0.1 695,434 + +0.1 695,434 + +0.6 695,434 + -1.4 695,438 - +0.8 695,438 - +0.0 695,440 - -1.4 695,466 + -0.4 695,466 + +0.5 695,471 + +0.0 695,472 - +1.4 695,472 - +2.4 695,511 + +1.4 695,511 + -1.3 695,511 + +1.5 695,511 + +0.1 695,511 + -0.3 695,512 - -2.1 695,512 - +1.3 695,512 - -0.9 695,550 + -0.7 695,551 - -0.2 695,551 - +0.5 695,551 - +0.3 695,622 + Sama_0560 0.13 -0.1 695,622 + Sama_0560 0.13 -1.1 695,623 - Sama_0560 0.14 -0.9 695,623 - Sama_0560 0.14 -1.2 695,640 + Sama_0560 0.15 -0.8 695,640 + Sama_0560 0.15 -0.4 695,641 - Sama_0560 0.15 -0.8 695,641 - Sama_0560 0.15 +0.7 695,641 - Sama_0560 0.15 -0.2 695,676 + Sama_0560 0.18 +4.3 695,676 + Sama_0560 0.18 -0.3 695,676 + Sama_0560 0.18 -1.4 695,677 - Sama_0560 0.18 -0.5 695,677 - Sama_0560 0.18 +0.3 695,677 - Sama_0560 0.18 -2.8 695,677 - Sama_0560 0.18 -1.0 695,721 + Sama_0560 0.22 +0.5 695,721 + Sama_0560 0.22 +2.0 695,721 + Sama_0560 0.22 -1.7 695,722 - Sama_0560 0.22 -0.5 695,722 - Sama_0560 0.22 -0.9 695,722 - Sama_0560 0.22 +0.2 695,722 - Sama_0560 0.22 -0.5 695,722 - Sama_0560 0.22 +0.9 695,722 - Sama_0560 0.22 +1.0 695,722 - Sama_0560 0.22 +1.2 695,722 - Sama_0560 0.22 -0.3 695,725 + Sama_0560 0.22 -2.0 695,725 + Sama_0560 0.22 +0.0 695,725 + Sama_0560 0.22 -1.9 695,725 + Sama_0560 0.22 +2.2 695,726 - Sama_0560 0.22 +1.4 695,726 - Sama_0560 0.22 -1.3 695,726 - Sama_0560 0.22 +0.7 695,726 - Sama_0560 0.22 -0.1 695,763 + Sama_0560 0.25 -0.6 695,763 + Sama_0560 0.25 +0.6 695,763 + Sama_0560 0.25 -0.1 695,763 + Sama_0560 0.25 +0.1 695,764 - Sama_0560 0.26 -0.2 695,764 - Sama_0560 0.26 +1.2 695,764 - Sama_0560 0.26 -1.5 695,764 - Sama_0560 0.26 +0.2 695,835 - Sama_0560 0.32 -1.6 695,952 + Sama_0560 0.42 -0.5 695,952 + Sama_0560 0.42 -1.3 695,952 + Sama_0560 0.42 +0.8 695,981 - Sama_0560 0.44 -2.8
Or see this region's nucleotide sequence