Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3643

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3641 and Dshi_3642 overlap by 4 nucleotidesDshi_3642 and Dshi_3643 overlap by 11 nucleotidesDshi_3643 and Dshi_3644 overlap by 1 nucleotidesDshi_3644 and Dshi_3645 are separated by 14 nucleotides Dshi_3641: Dshi_3641 - CagE TrbE VirB component of type IV transporter system (RefSeq), at 40,348 to 42,723 _3641 Dshi_3642: Dshi_3642 - hypothetical protein (RefSeq), at 42,720 to 42,887 _3642 Dshi_3643: Dshi_3643 - Lytic transglycosylase catalytic (RefSeq), at 42,877 to 44,031 _3643 Dshi_3644: Dshi_3644 - hypothetical protein (RefSeq), at 44,031 to 44,840 _3644 Dshi_3645: Dshi_3645 - VirB8 family protein (RefSeq), at 44,855 to 45,511 _3645 Position (kb) 42 43 44 45Strain fitness (log2 ratio) -2 -1 0 1at 41.881 kb on - strand, within Dshi_3641at 41.926 kb on + strand, within Dshi_3641at 41.928 kb on + strand, within Dshi_3641at 41.928 kb on + strand, within Dshi_3641at 41.936 kb on - strand, within Dshi_3641at 41.936 kb on - strand, within Dshi_3641at 41.954 kb on + strand, within Dshi_3641at 41.954 kb on + strand, within Dshi_3641at 41.954 kb on + strand, within Dshi_3641at 41.955 kb on - strand, within Dshi_3641at 41.959 kb on + strand, within Dshi_3641at 41.964 kb on + strand, within Dshi_3641at 41.967 kb on - strand, within Dshi_3641at 42.014 kb on - strand, within Dshi_3641at 42.019 kb on - strand, within Dshi_3641at 42.019 kb on - strand, within Dshi_3641at 42.229 kb on + strand, within Dshi_3641at 42.574 kb on - strandat 42.599 kb on - strandat 42.749 kb on + strand, within Dshi_3642at 42.764 kb on - strand, within Dshi_3642at 42.784 kb on - strand, within Dshi_3642at 42.830 kb on - strand, within Dshi_3642at 42.889 kb on - strandat 42.889 kb on - strandat 42.901 kb on - strandat 42.906 kb on - strandat 42.911 kb on + strandat 42.940 kb on + strandat 42.941 kb on - strandat 42.942 kb on - strandat 43.000 kb on + strand, within Dshi_3643at 43.032 kb on - strand, within Dshi_3643at 43.087 kb on - strand, within Dshi_3643at 43.099 kb on + strand, within Dshi_3643at 43.107 kb on - strand, within Dshi_3643at 43.107 kb on - strand, within Dshi_3643at 43.107 kb on - strand, within Dshi_3643at 43.118 kb on - strand, within Dshi_3643at 43.125 kb on - strand, within Dshi_3643at 43.189 kb on + strand, within Dshi_3643at 43.228 kb on + strand, within Dshi_3643at 43.326 kb on + strand, within Dshi_3643at 43.331 kb on - strand, within Dshi_3643at 43.331 kb on - strand, within Dshi_3643at 43.341 kb on - strand, within Dshi_3643at 43.341 kb on - strand, within Dshi_3643at 43.356 kb on - strand, within Dshi_3643at 43.412 kb on + strand, within Dshi_3643at 43.420 kb on - strand, within Dshi_3643at 43.420 kb on - strand, within Dshi_3643at 43.436 kb on - strand, within Dshi_3643at 43.436 kb on - strand, within Dshi_3643at 43.436 kb on - strand, within Dshi_3643at 43.471 kb on - strand, within Dshi_3643at 43.481 kb on + strand, within Dshi_3643at 43.489 kb on - strand, within Dshi_3643at 43.489 kb on - strand, within Dshi_3643at 43.535 kb on - strand, within Dshi_3643at 43.575 kb on - strand, within Dshi_3643at 43.627 kb on + strand, within Dshi_3643at 43.627 kb on + strand, within Dshi_3643at 43.639 kb on + strand, within Dshi_3643at 43.644 kb on + strand, within Dshi_3643at 43.645 kb on - strand, within Dshi_3643at 43.645 kb on - strand, within Dshi_3643at 43.645 kb on - strand, within Dshi_3643at 43.646 kb on - strand, within Dshi_3643at 43.648 kb on + strand, within Dshi_3643at 43.657 kb on - strand, within Dshi_3643at 43.672 kb on - strand, within Dshi_3643at 43.688 kb on + strand, within Dshi_3643at 43.728 kb on - strand, within Dshi_3643at 43.755 kb on - strand, within Dshi_3643at 43.814 kb on + strand, within Dshi_3643at 43.817 kb on - strand, within Dshi_3643at 43.843 kb on + strand, within Dshi_3643at 43.876 kb on + strand, within Dshi_3643at 43.876 kb on + strand, within Dshi_3643at 43.877 kb on + strand, within Dshi_3643at 43.884 kb on - strand, within Dshi_3643at 43.884 kb on - strand, within Dshi_3643at 43.885 kb on - strand, within Dshi_3643at 43.891 kb on + strand, within Dshi_3643at 43.933 kb on + strandat 43.941 kb on - strandat 43.941 kb on - strandat 43.947 kb on + strandat 43.971 kb on + strandat 44.024 kb on - strandat 44.069 kb on + strandat 44.069 kb on + strandat 44.076 kb on - strandat 44.103 kb on - strandat 44.104 kb on - strandat 44.144 kb on - strand, within Dshi_3644at 44.144 kb on - strand, within Dshi_3644at 44.236 kb on - strand, within Dshi_3644at 44.277 kb on + strand, within Dshi_3644at 44.285 kb on - strand, within Dshi_3644at 44.285 kb on - strand, within Dshi_3644at 44.342 kb on - strand, within Dshi_3644at 44.349 kb on - strand, within Dshi_3644at 44.365 kb on - strand, within Dshi_3644at 44.387 kb on + strand, within Dshi_3644at 44.387 kb on + strand, within Dshi_3644at 44.387 kb on + strand, within Dshi_3644at 44.387 kb on - strand, within Dshi_3644at 44.404 kb on + strand, within Dshi_3644at 44.422 kb on - strand, within Dshi_3644at 44.456 kb on + strand, within Dshi_3644at 44.456 kb on + strand, within Dshi_3644at 44.481 kb on + strand, within Dshi_3644at 44.516 kb on + strand, within Dshi_3644at 44.516 kb on + strand, within Dshi_3644at 44.541 kb on - strand, within Dshi_3644at 44.551 kb on - strand, within Dshi_3644at 44.561 kb on + strand, within Dshi_3644at 44.644 kb on + strand, within Dshi_3644at 44.661 kb on - strand, within Dshi_3644at 44.726 kb on + strand, within Dshi_3644at 44.734 kb on - strand, within Dshi_3644at 44.734 kb on - strand, within Dshi_3644at 44.788 kb on - strandat 44.818 kb on + strandat 44.835 kb on + strandat 44.847 kb on - strandat 44.851 kb on - strandat 44.856 kb on - strandat 44.858 kb on - strandat 44.886 kb on - strandat 44.901 kb on + strandat 44.911 kb on - strandat 44.920 kb on + strandat 44.953 kb on - strand, within Dshi_3645at 44.987 kb on + strand, within Dshi_3645at 45.022 kb on - strand, within Dshi_3645at 45.027 kb on + strand, within Dshi_3645

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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41,881 - Dshi_3641 0.65 +0.0
41,926 + Dshi_3641 0.66 +0.5
41,928 + Dshi_3641 0.66 -0.4
41,928 + Dshi_3641 0.66 +0.1
41,936 - Dshi_3641 0.67 -0.0
41,936 - Dshi_3641 0.67 -0.5
41,954 + Dshi_3641 0.68 -0.4
41,954 + Dshi_3641 0.68 +0.8
41,954 + Dshi_3641 0.68 -1.4
41,955 - Dshi_3641 0.68 -0.3
41,959 + Dshi_3641 0.68 +0.4
41,964 + Dshi_3641 0.68 -0.2
41,967 - Dshi_3641 0.68 -0.5
42,014 - Dshi_3641 0.70 -0.6
42,019 - Dshi_3641 0.70 -0.7
42,019 - Dshi_3641 0.70 -1.3
42,229 + Dshi_3641 0.79 +0.5
42,574 - -0.1
42,599 - -1.9
42,749 + Dshi_3642 0.17 +0.2
42,764 - Dshi_3642 0.26 -0.4
42,784 - Dshi_3642 0.38 -0.2
42,830 - Dshi_3642 0.65 +0.1
42,889 - +0.5
42,889 - +1.0
42,901 - -0.9
42,906 - +0.2
42,911 + -0.4
42,940 + -0.2
42,941 - +0.7
42,942 - +0.1
43,000 + Dshi_3643 0.11 -1.4
43,032 - Dshi_3643 0.13 -0.6
43,087 - Dshi_3643 0.18 -0.7
43,099 + Dshi_3643 0.19 -1.1
43,107 - Dshi_3643 0.20 -1.0
43,107 - Dshi_3643 0.20 +0.0
43,107 - Dshi_3643 0.20 -0.2
43,118 - Dshi_3643 0.21 +0.4
43,125 - Dshi_3643 0.21 +0.3
43,189 + Dshi_3643 0.27 -0.2
43,228 + Dshi_3643 0.30 -0.7
43,326 + Dshi_3643 0.39 +0.1
43,331 - Dshi_3643 0.39 -0.6
43,331 - Dshi_3643 0.39 -0.4
43,341 - Dshi_3643 0.40 -0.0
43,341 - Dshi_3643 0.40 +1.4
43,356 - Dshi_3643 0.41 +0.6
43,412 + Dshi_3643 0.46 -1.0
43,420 - Dshi_3643 0.47 +0.1
43,420 - Dshi_3643 0.47 +0.3
43,436 - Dshi_3643 0.48 +0.6
43,436 - Dshi_3643 0.48 +0.2
43,436 - Dshi_3643 0.48 -0.4
43,471 - Dshi_3643 0.51 -0.5
43,481 + Dshi_3643 0.52 +0.2
43,489 - Dshi_3643 0.53 -2.5
43,489 - Dshi_3643 0.53 +0.1
43,535 - Dshi_3643 0.57 -0.1
43,575 - Dshi_3643 0.60 -1.2
43,627 + Dshi_3643 0.65 +1.2
43,627 + Dshi_3643 0.65 -0.3
43,639 + Dshi_3643 0.66 +0.5
43,644 + Dshi_3643 0.66 -1.3
43,645 - Dshi_3643 0.66 -0.4
43,645 - Dshi_3643 0.66 -1.0
43,645 - Dshi_3643 0.66 -0.4
43,646 - Dshi_3643 0.67 -0.3
43,648 + Dshi_3643 0.67 +0.5
43,657 - Dshi_3643 0.68 +0.2
43,672 - Dshi_3643 0.69 -1.2
43,688 + Dshi_3643 0.70 +1.0
43,728 - Dshi_3643 0.74 +0.2
43,755 - Dshi_3643 0.76 +0.5
43,814 + Dshi_3643 0.81 -0.2
43,817 - Dshi_3643 0.81 -0.4
43,843 + Dshi_3643 0.84 -0.6
43,876 + Dshi_3643 0.86 -0.7
43,876 + Dshi_3643 0.86 -0.6
43,877 + Dshi_3643 0.87 +0.7
43,884 - Dshi_3643 0.87 +0.0
43,884 - Dshi_3643 0.87 +0.3
43,885 - Dshi_3643 0.87 +0.1
43,891 + Dshi_3643 0.88 -1.3
43,933 + +0.2
43,941 - -0.1
43,941 - -0.2
43,947 + -0.4
43,971 + -1.6
44,024 - -0.6
44,069 + -0.3
44,069 + +0.3
44,076 - +0.5
44,103 - -0.0
44,104 - -0.7
44,144 - Dshi_3644 0.14 -0.2
44,144 - Dshi_3644 0.14 -0.7
44,236 - Dshi_3644 0.25 -1.2
44,277 + Dshi_3644 0.30 +0.1
44,285 - Dshi_3644 0.31 +1.6
44,285 - Dshi_3644 0.31 -0.4
44,342 - Dshi_3644 0.38 +0.4
44,349 - Dshi_3644 0.39 +0.0
44,365 - Dshi_3644 0.41 +1.0
44,387 + Dshi_3644 0.44 -1.6
44,387 + Dshi_3644 0.44 +0.3
44,387 + Dshi_3644 0.44 +0.7
44,387 - Dshi_3644 0.44 +1.6
44,404 + Dshi_3644 0.46 -0.0
44,422 - Dshi_3644 0.48 +0.1
44,456 + Dshi_3644 0.52 +0.1
44,456 + Dshi_3644 0.52 -1.5
44,481 + Dshi_3644 0.56 -0.8
44,516 + Dshi_3644 0.60 +0.4
44,516 + Dshi_3644 0.60 -1.9
44,541 - Dshi_3644 0.63 -0.9
44,551 - Dshi_3644 0.64 -0.1
44,561 + Dshi_3644 0.65 +0.6
44,644 + Dshi_3644 0.76 +0.1
44,661 - Dshi_3644 0.78 +0.7
44,726 + Dshi_3644 0.86 -0.7
44,734 - Dshi_3644 0.87 +0.4
44,734 - Dshi_3644 0.87 +0.1
44,788 - +0.7
44,818 + +0.7
44,835 + +0.6
44,847 - +0.2
44,851 - +0.1
44,856 - +0.4
44,858 - -0.4
44,886 - -0.2
44,901 + -0.9
44,911 - -0.7
44,920 + +0.2
44,953 - Dshi_3645 0.15 -0.0
44,987 + Dshi_3645 0.20 -0.2
45,022 - Dshi_3645 0.25 +1.1
45,027 + Dshi_3645 0.26 -0.4

Or see this region's nucleotide sequence