Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3363

Experiment: Fumarate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fumarate (C)
3,534,289	+		Dshi_3361	0.72	+0.7
3,534,314	-		Dshi_3361	0.74	+0.2
3,534,314	-		Dshi_3361	0.74	+0.7
3,534,380	-		Dshi_3361	0.78	-0.2
3,534,392	+		Dshi_3361	0.79	+2.2
3,534,400	-		Dshi_3361	0.79	+0.4
3,534,400	-		Dshi_3361	0.79	-0.1
3,534,400	-		Dshi_3361	0.79	-1.1
3,534,412	+		Dshi_3361	0.80	+0.5
3,534,436	+		Dshi_3361	0.82	+2.3
3,534,492	-		Dshi_3361	0.85	-1.0
3,534,497	+		Dshi_3361	0.86	+0.5
3,534,501	+		Dshi_3361	0.86	+0.4
3,534,509	-		Dshi_3361	0.86	-0.6
3,534,522	+		Dshi_3361	0.87	+1.0
3,534,545	+		Dshi_3361	0.89	-0.3
3,534,545	+		Dshi_3361	0.89	-0.0
3,534,545	-		Dshi_3361	0.89	+0.2
3,534,553	-		Dshi_3361	0.89	+0.4
3,534,557	+		Dshi_3361	0.89	+0.8
3,534,568	-				+2.0
3,534,590	+				-0.2
3,534,595	+				+0.2
3,534,597	+				-0.0
3,534,597	+				+1.8
3,534,598	-				-0.8
3,534,598	-				-0.3
3,534,614	+				+0.2
3,534,622	-				-0.1
3,534,631	-				+0.4
3,534,651	+				-0.3
3,534,651	+				-0.1
3,534,651	+				+0.1
3,534,659	-				+1.3
3,534,659	-				+0.8
3,534,659	-				-0.2
3,534,659	-				+0.0
3,534,659	-				+1.1
3,534,659	-				+0.8
3,534,666	+				-0.2
3,534,674	-				-0.0
3,534,674	-				+0.7
3,534,686	+				+0.3
3,534,687	+				+0.3
3,534,689	-				+0.9
3,534,689	-				+0.2
3,534,726	-				+0.5
3,534,728	+				+0.4
3,534,728	+				+0.2
3,534,728	+				+0.4
3,534,728	+				-0.0
3,534,728	+				+0.0
3,534,728	+				-0.1
3,534,728	+				+0.3
3,534,728	+				-0.9
3,534,736	-				+0.1
3,534,736	-				-0.3
3,534,736	-				+1.5
3,534,736	-				+1.0
3,534,736	-				+0.3
3,534,736	-				-0.1
3,534,736	-				-0.1
3,534,736	-				+1.1
3,534,736	-				+0.5
3,534,799	-				+0.0
3,534,800	+				+0.4
3,534,808	+				+0.6
3,534,812	+				+0.7
3,534,816	+				-0.9
3,534,816	-				+0.1
3,534,816	-				-0.2
3,534,816	-				+0.2
3,534,816	-				-0.7
3,534,820	-				+0.8
3,534,820	-				+0.7
3,534,820	-				-2.3
3,534,820	-				+0.5
3,534,831	-				+0.2
3,534,831	-				+1.0
3,534,831	-				+0.3
3,534,835	+				-0.3
3,534,835	+				-0.2
3,534,843	-				+0.7
3,534,843	-				-0.5
3,534,850	-				-1.0
3,534,864	-				+0.5
3,534,882	+				-0.7
3,534,891	-				+0.3
3,534,891	-				+1.1
3,534,891	-				-0.7
3,534,891	-				-0.8
3,534,892	+				+2.2
3,534,900	-				-0.2
3,534,900	-				-0.4
3,534,928	+				+0.3
3,534,951	+		Dshi_3362	0.13	+0.8
3,534,951	+		Dshi_3362	0.13	+0.7
3,534,951	+		Dshi_3362	0.13	-1.6
3,534,958	-		Dshi_3362	0.15	+0.2
3,534,959	-		Dshi_3362	0.16	+0.1
3,534,959	-		Dshi_3362	0.16	+0.1
3,534,962	+		Dshi_3362	0.17	+1.4
3,534,962	+		Dshi_3362	0.17	-1.9
3,534,962	+		Dshi_3362	0.17	-0.5
3,534,962	+		Dshi_3362	0.17	-1.0
3,534,970	-		Dshi_3362	0.19	+0.8
3,534,977	-		Dshi_3362	0.21	-0.8
3,534,994	+		Dshi_3362	0.27	-0.0
3,534,999	-		Dshi_3362	0.28	-0.0
3,535,002	-		Dshi_3362	0.29	-0.2
3,535,008	+		Dshi_3362	0.31	+1.5
3,535,008	+		Dshi_3362	0.31	+0.5
3,535,010	+		Dshi_3362	0.32	+0.4
3,535,010	+		Dshi_3362	0.32	+0.2
3,535,010	+		Dshi_3362	0.32	+0.2
3,535,016	-		Dshi_3362	0.34	+0.6
3,535,016	-		Dshi_3362	0.34	-0.0
3,535,016	-		Dshi_3362	0.34	-0.4
3,535,018	-		Dshi_3362	0.35	+0.4
3,535,045	-		Dshi_3362	0.43	+1.4
3,535,075	+		Dshi_3362	0.53	+0.2
3,535,078	-		Dshi_3362	0.54	+0.4
3,535,083	-		Dshi_3362	0.56	+0.1
3,535,085	-		Dshi_3362	0.56	+0.3
3,535,094	+		Dshi_3362	0.59	+0.5
3,535,107	+		Dshi_3362	0.63	+0.3
3,535,107	+		Dshi_3362	0.63	+0.5
3,535,115	-		Dshi_3362	0.66	+0.6
3,535,118	+		Dshi_3362	0.67	+0.6
3,535,118	+		Dshi_3362	0.67	+1.1
3,535,149	-		Dshi_3362	0.77	-0.1
3,535,151	+		Dshi_3362	0.78	+0.2
3,535,151	+		Dshi_3362	0.78	+1.3
3,535,151	+		Dshi_3362	0.78	+0.4
3,535,151	+		Dshi_3362	0.78	-0.1
3,535,151	+		Dshi_3362	0.78	+0.1
3,535,151	+		Dshi_3362	0.78	+1.1
3,535,151	+		Dshi_3362	0.78	+1.3
3,535,151	+		Dshi_3362	0.78	+1.2
3,535,151	+		Dshi_3362	0.78	-0.0
3,535,151	+		Dshi_3362	0.78	-0.4
3,535,151	+		Dshi_3362	0.78	-1.6
3,535,151	+		Dshi_3362	0.78	-0.1
3,535,151	+		Dshi_3362	0.78	+0.5
3,535,151	+		Dshi_3362	0.78	+0.5
3,535,151	+		Dshi_3362	0.78	+0.8
3,535,151	+		Dshi_3362	0.78	+0.3
3,535,151	+		Dshi_3362	0.78	-0.6
3,535,151	+		Dshi_3362	0.78	+1.0
3,535,151	+		Dshi_3362	0.78	-0.7
3,535,151	+		Dshi_3362	0.78	+0.4
3,535,151	+		Dshi_3362	0.78	-0.5
3,535,151	+		Dshi_3362	0.78	+0.0
3,535,151	+		Dshi_3362	0.78	+0.7
3,535,151	+		Dshi_3362	0.78	+0.2
3,535,151	+		Dshi_3362	0.78	-0.6
3,535,151	+		Dshi_3362	0.78	+0.2
3,535,151	+		Dshi_3362	0.78	-2.2
3,535,151	+		Dshi_3362	0.78	+1.0
3,535,151	+		Dshi_3362	0.78	-1.0
3,535,151	+		Dshi_3362	0.78	+0.7
3,535,151	+		Dshi_3362	0.78	-1.5
3,535,151	+		Dshi_3362	0.78	-1.7
3,535,151	+		Dshi_3362	0.78	+0.5
3,535,153	-		Dshi_3362	0.78	+0.7
3,535,153	-		Dshi_3362	0.78	+0.7
3,535,159	-		Dshi_3362	0.80	+0.4
3,535,159	-		Dshi_3362	0.80	+0.1
3,535,159	-		Dshi_3362	0.80	+0.4
3,535,159	-		Dshi_3362	0.80	+0.3
3,535,159	-		Dshi_3362	0.80	+1.1
3,535,159	-		Dshi_3362	0.80	+0.9
3,535,159	-		Dshi_3362	0.80	+0.7
3,535,159	-		Dshi_3362	0.80	+0.7
3,535,159	-		Dshi_3362	0.80	+0.8
3,535,159	-		Dshi_3362	0.80	+0.7
3,535,159	-		Dshi_3362	0.80	-2.4
3,535,159	-		Dshi_3362	0.80	+0.5
3,535,159	-		Dshi_3362	0.80	+1.7
3,535,159	-		Dshi_3362	0.80	-0.2
3,535,159	-		Dshi_3362	0.80	+1.1
3,535,159	-		Dshi_3362	0.80	+0.8
3,535,159	-		Dshi_3362	0.80	+1.2
3,535,159	-		Dshi_3362	0.80	-1.2
3,535,159	-		Dshi_3362	0.80	+1.1
3,535,159	-		Dshi_3362	0.80	+0.2
3,535,159	-		Dshi_3362	0.80	+1.4
3,535,159	-		Dshi_3362	0.80	+0.4
3,535,159	-		Dshi_3362	0.80	-0.3
3,535,159	-		Dshi_3362	0.80	+0.8
3,535,159	-		Dshi_3362	0.80	+0.3
3,535,159	-		Dshi_3362	0.80	+0.7
3,535,159	-		Dshi_3362	0.80	+1.4
3,535,161	+		Dshi_3362	0.81	+1.3
3,535,192	+				-1.9
3,535,193	-				+0.0
3,535,200	-				+0.6
3,535,207	-				-1.1
3,535,228	-				+0.4
3,535,228	-				-1.5
3,535,228	-				+0.8
3,535,231	+				+0.6
3,535,231	+				+0.1
3,535,240	-				-0.3
3,535,275	-		Dshi_3363	0.11	-0.3
3,535,324	+		Dshi_3363	0.27	+1.2
3,535,324	+		Dshi_3363	0.27	+0.4
3,535,324	+		Dshi_3363	0.27	+0.9
3,535,332	-		Dshi_3363	0.30	-0.4
3,535,364	-		Dshi_3363	0.40	+0.0
3,535,386	-		Dshi_3363	0.48	+1.4
3,535,387	-		Dshi_3363	0.48	+0.1
3,535,389	-		Dshi_3363	0.49	-0.5
3,535,407	-		Dshi_3363	0.54	+1.1
3,535,414	+		Dshi_3363	0.57	+1.1
3,535,422	-		Dshi_3363	0.59	+0.3
3,535,422	-		Dshi_3363	0.59	+1.4
3,535,422	-		Dshi_3363	0.59	+0.5
3,535,422	-		Dshi_3363	0.59	+1.3
3,535,427	-		Dshi_3363	0.61	+1.1
3,535,431	+		Dshi_3363	0.62	+0.7
3,535,434	-		Dshi_3363	0.63	+0.1
3,535,443	+		Dshi_3363	0.66	+0.6
3,535,451	-		Dshi_3363	0.69	+0.0
3,535,463	+		Dshi_3363	0.73	+0.2
3,535,463	+		Dshi_3363	0.73	+1.7
3,535,471	-		Dshi_3363	0.76	-0.6
3,535,472	-		Dshi_3363	0.76	+0.9
3,535,477	-		Dshi_3363	0.78	-0.7
3,535,482	+		Dshi_3363	0.79	+0.3
3,535,485	-		Dshi_3363	0.80	-0.5
3,535,491	-		Dshi_3363	0.82	-1.5
3,535,491	-		Dshi_3363	0.82	-0.1
3,535,496	+		Dshi_3363	0.84	-0.1
3,535,497	+		Dshi_3363	0.84	+0.8
3,535,500	-		Dshi_3363	0.85	+0.5
3,535,504	-		Dshi_3363	0.86	+0.1
3,535,507	+		Dshi_3363	0.87	+0.7
3,535,507	+		Dshi_3363	0.87	-0.1
3,535,507	+		Dshi_3363	0.87	-0.0
3,535,507	+		Dshi_3363	0.87	+1.4
3,535,507	+		Dshi_3363	0.87	+1.1
3,535,515	-				+1.7
3,535,515	-				-0.3
3,535,515	-				-0.4
3,535,515	-				+1.4
3,535,575	+				+0.2
3,535,583	-				-0.3
3,535,585	-				+0.1
3,535,585	-				-0.1
3,535,598	-				-1.1
3,535,598	-				-0.5
3,535,598	-				-0.3
3,535,598	-				-0.0
3,535,622	+				+1.6
3,535,649	-				+0.5
3,535,651	+				+0.3
3,535,651	+				+0.7
3,535,651	+				+0.1
3,535,651	+				+0.4
3,535,656	+				+1.2
3,535,659	-				+0.8
3,535,662	+				+1.0
3,535,662	-				-0.6
3,535,669	-				-0.4
3,535,684	+				+1.5
3,535,692	-				-0.6
3,535,699	+				+0.6
3,535,699	+				+0.3
3,535,709	-				-0.5
3,535,710	+				+0.4
3,535,710	+				-0.1
3,535,710	+				+1.3
3,535,718	-				+0.3
3,535,718	-				+0.7
3,535,718	-				-0.9
3,535,726	+				-0.1
3,535,746	+				+0.3
3,535,754	-				+0.9
3,535,779	-				+0.9
3,535,780	-				+0.2
3,535,787	+				+0.1
3,535,820	-				-0.6
3,535,849	+				+0.1
3,535,866	-				+0.4
3,535,885	-				+0.1
3,535,952	+		Dshi_3364	0.12	+0.3
3,535,953	-		Dshi_3364	0.12	-2.6
3,535,979	+		Dshi_3364	0.13	-0.1
3,535,979	+		Dshi_3364	0.13	+0.6
3,535,984	+		Dshi_3364	0.14	-1.0
3,535,997	+		Dshi_3364	0.14	+0.2
3,536,003	+		Dshi_3364	0.14	-0.1
3,536,047	+		Dshi_3364	0.16	+0.5
3,536,103	-		Dshi_3364	0.19	+0.7
3,536,109	-		Dshi_3364	0.19	+0.0
3,536,126	+		Dshi_3364	0.20	-0.8
3,536,133	+		Dshi_3364	0.20	+0.5
3,536,141	-		Dshi_3364	0.20	+1.2
3,536,141	-		Dshi_3364	0.20	+0.3
3,536,171	+		Dshi_3364	0.22	+0.4
3,536,198	-		Dshi_3364	0.23	+0.1
3,536,208	+		Dshi_3364	0.23	-0.4
3,536,208	-		Dshi_3364	0.23	+0.2
3,536,230	+		Dshi_3364	0.24	-1.5
3,536,238	-		Dshi_3364	0.24	-1.6
3,536,243	+		Dshi_3364	0.25	+1.4
3,536,243	-		Dshi_3364	0.25	+0.9
3,536,275	+		Dshi_3364	0.26	-0.6
3,536,275	+		Dshi_3364	0.26	+0.5
3,536,275	+		Dshi_3364	0.26	+0.3
3,536,275	+		Dshi_3364	0.26	+0.2
3,536,275	+		Dshi_3364	0.26	+1.1
3,536,283	-		Dshi_3364	0.26	+0.5
3,536,283	-		Dshi_3364	0.26	-0.6
3,536,283	-		Dshi_3364	0.26	+0.2
3,536,283	-		Dshi_3364	0.26	+0.4
3,536,283	-		Dshi_3364	0.26	+1.0
3,536,283	-		Dshi_3364	0.26	-1.8
3,536,283	-		Dshi_3364	0.26	+1.7
3,536,285	+		Dshi_3364	0.26	+0.2
3,536,316	+		Dshi_3364	0.28	+0.7
3,536,326	+		Dshi_3364	0.28	+0.6
3,536,326	+		Dshi_3364	0.28	-0.6
3,536,334	-		Dshi_3364	0.29	-0.0
3,536,396	+		Dshi_3364	0.31	+1.0
3,536,396	+		Dshi_3364	0.31	+1.9
3,536,396	+		Dshi_3364	0.31	-1.6
3,536,404	-		Dshi_3364	0.32	+0.0
3,536,406	+		Dshi_3364	0.32	-0.9
3,536,415	+		Dshi_3364	0.32	-0.1
3,536,415	+		Dshi_3364	0.32	+1.4
3,536,415	+		Dshi_3364	0.32	+0.3
3,536,415	+		Dshi_3364	0.32	+0.9
3,536,415	+		Dshi_3364	0.32	-0.2
3,536,423	-		Dshi_3364	0.32	+0.7
3,536,423	-		Dshi_3364	0.32	+0.3
3,536,423	-		Dshi_3364	0.32	+0.4
3,536,435	-		Dshi_3364	0.33	+0.5
3,536,437	+		Dshi_3364	0.33	+0.5
3,536,444	+		Dshi_3364	0.33	+0.1
3,536,445	-		Dshi_3364	0.33	+0.9
3,536,452	-		Dshi_3364	0.34	+0.3
3,536,456	+		Dshi_3364	0.34	+1.1
3,536,487	+		Dshi_3364	0.35	+1.0
3,536,500	-		Dshi_3364	0.36	+1.1
3,536,543	+		Dshi_3364	0.37	+0.6