Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0071 and Dshi_0072 are separated by 61 nucleotides Dshi_0072 and Dshi_0073 are separated by 14 nucleotides Dshi_0073 and Dshi_0074 are separated by 99 nucleotides
Dshi_0071: Dshi_0071 - Gamma-glutamyltransferase (RefSeq), at 71,093 to 72,676
_0071
Dshi_0072: Dshi_0072 - putative anti-sigma regulatory factor, serine/threonine protein kinase (RefSeq), at 72,738 to 73,247
_0072
Dshi_0073: Dshi_0073 - anti-sigma-factor antagonist (RefSeq), at 73,262 to 73,594
_0073
Dshi_0074: Dshi_0074 - acetyl-CoA acetyltransferase (RefSeq), at 73,694 to 74,872
_0074
Position (kb) 72
73
74 Strain fitness (log2 ratio) -1
0
1 at 71.753 kb on - strand, within Dshi_0071 at 71.763 kb on - strand, within Dshi_0071 at 71.764 kb on - strand, within Dshi_0071 at 71.764 kb on - strand, within Dshi_0071 at 71.847 kb on + strand, within Dshi_0071 at 72.239 kb on + strand, within Dshi_0071 at 72.291 kb on - strand, within Dshi_0071 at 72.382 kb on - strand, within Dshi_0071 at 72.483 kb on - strand, within Dshi_0071 at 72.505 kb on + strand, within Dshi_0071 at 72.592 kb on + strand at 72.682 kb on + strand at 72.756 kb on + strand at 72.759 kb on - strand at 72.855 kb on - strand, within Dshi_0072 at 72.861 kb on - strand, within Dshi_0072 at 72.902 kb on + strand, within Dshi_0072 at 72.903 kb on + strand, within Dshi_0072 at 72.908 kb on + strand, within Dshi_0072 at 72.928 kb on + strand, within Dshi_0072 at 73.005 kb on - strand, within Dshi_0072 at 73.041 kb on - strand, within Dshi_0072 at 73.041 kb on - strand, within Dshi_0072 at 73.046 kb on - strand, within Dshi_0072 at 73.056 kb on - strand, within Dshi_0072 at 73.081 kb on - strand, within Dshi_0072 at 73.099 kb on + strand, within Dshi_0072 at 73.099 kb on + strand, within Dshi_0072 at 73.117 kb on - strand, within Dshi_0072 at 73.120 kb on + strand, within Dshi_0072 at 73.157 kb on - strand, within Dshi_0072 at 73.177 kb on + strand, within Dshi_0072 at 73.210 kb on + strand at 73.210 kb on + strand at 73.210 kb on - strand at 73.212 kb on + strand at 73.218 kb on - strand at 73.392 kb on - strand, within Dshi_0073 at 73.428 kb on - strand, within Dshi_0073 at 73.454 kb on + strand, within Dshi_0073 at 73.455 kb on - strand, within Dshi_0073 at 73.469 kb on + strand, within Dshi_0073 at 73.496 kb on + strand, within Dshi_0073 at 73.538 kb on + strand, within Dshi_0073 at 73.605 kb on + strand at 73.627 kb on + strand at 73.627 kb on + strand at 73.629 kb on - strand at 73.635 kb on - strand at 73.732 kb on + strand at 73.777 kb on + strand at 73.964 kb on + strand, within Dshi_0074 at 73.972 kb on - strand, within Dshi_0074 at 74.141 kb on - strand, within Dshi_0074 at 74.150 kb on + strand, within Dshi_0074 at 74.152 kb on - strand, within Dshi_0074 at 74.216 kb on + strand, within Dshi_0074 at 74.224 kb on - strand, within Dshi_0074
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 71,753 - Dshi_0071 0.42 +0.4 71,763 - Dshi_0071 0.42 -0.0 71,764 - Dshi_0071 0.42 -0.8 71,764 - Dshi_0071 0.42 -0.8 71,847 + Dshi_0071 0.48 -0.1 72,239 + Dshi_0071 0.72 +0.1 72,291 - Dshi_0071 0.76 +0.8 72,382 - Dshi_0071 0.81 +0.0 72,483 - Dshi_0071 0.88 +0.8 72,505 + Dshi_0071 0.89 +0.3 72,592 + -0.3 72,682 + +0.5 72,756 + +0.2 72,759 - +0.6 72,855 - Dshi_0072 0.23 -0.5 72,861 - Dshi_0072 0.24 +1.1 72,902 + Dshi_0072 0.32 +1.4 72,903 + Dshi_0072 0.32 +0.5 72,908 + Dshi_0072 0.33 +0.4 72,928 + Dshi_0072 0.37 +1.5 73,005 - Dshi_0072 0.52 +0.8 73,041 - Dshi_0072 0.59 +0.3 73,041 - Dshi_0072 0.59 +1.0 73,046 - Dshi_0072 0.60 +1.3 73,056 - Dshi_0072 0.62 +1.0 73,081 - Dshi_0072 0.67 +0.4 73,099 + Dshi_0072 0.71 +0.6 73,099 + Dshi_0072 0.71 +0.8 73,117 - Dshi_0072 0.74 +0.8 73,120 + Dshi_0072 0.75 +0.6 73,157 - Dshi_0072 0.82 +0.8 73,177 + Dshi_0072 0.86 +0.2 73,210 + +0.2 73,210 + -0.1 73,210 - +0.3 73,212 + +0.5 73,218 - +1.0 73,392 - Dshi_0073 0.39 -0.8 73,428 - Dshi_0073 0.50 -0.4 73,454 + Dshi_0073 0.58 -1.5 73,455 - Dshi_0073 0.58 -1.1 73,469 + Dshi_0073 0.62 -0.5 73,496 + Dshi_0073 0.70 -0.6 73,538 + Dshi_0073 0.83 +0.4 73,605 + +0.3 73,627 + -0.0 73,627 + -0.3 73,629 - -0.4 73,635 - -0.1 73,732 + +0.6 73,777 + +0.2 73,964 + Dshi_0074 0.23 +0.2 73,972 - Dshi_0074 0.24 +0.2 74,141 - Dshi_0074 0.38 -0.8 74,150 + Dshi_0074 0.39 +0.3 74,152 - Dshi_0074 0.39 +0.4 74,216 + Dshi_0074 0.44 -0.5 74,224 - Dshi_0074 0.45 -1.3
Or see this region's nucleotide sequence