Strain Fitness in Shewanella oneidensis MR-1 around SOA0042

Experiment: NAG (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C)
30,540	+		SO_A0039	0.88	+0.5
30,540	+		SO_A0039	0.88	-1.9
30,540	+		SO_A0039	0.88	+0.4
30,540	+		SO_A0039	0.88	+1.1
30,540	+		SO_A0039	0.88	+1.4
30,540	+		SO_A0039	0.88	-0.6
30,540	+		SO_A0039	0.88	+0.0
30,540	+		SO_A0039	0.88	-1.9
30,540	+		SO_A0039	0.88	-0.1
30,545	+		SO_A0039	0.89	+0.9
30,548	-		SO_A0039	0.89	-0.2
30,548	-		SO_A0039	0.89	+2.3
30,548	-		SO_A0039	0.89	-0.9
30,548	-		SO_A0039	0.89	-0.4
30,548	-		SO_A0039	0.89	+0.1
30,548	-		SO_A0039	0.89	+1.0
30,548	-		SO_A0039	0.89	+0.0
30,548	-		SO_A0039	0.89	+1.9
30,548	-		SO_A0039	0.89	-1.0
30,575	-				-0.2
30,586	+				+0.7
30,586	+				+0.1
30,594	-				-0.3
30,594	-				+0.6
30,602	-				+0.0
30,602	-				-0.5
30,602	-				+0.4
30,614	+				+0.7
30,614	+				+0.1
30,616	-				-0.9
30,631	+				+0.2
30,631	+				+1.2
30,639	+				+1.0
30,639	+				+0.5
30,639	-				+0.5
30,646	+				+0.1
30,646	+				+0.2
30,647	-				+0.8
30,653	+				-0.9
30,680	+				+1.0
30,681	+				+1.2
30,688	+				-0.0
30,688	-				+0.1
30,690	-				-0.1
30,696	-				+1.0
30,696	-				+0.2
30,696	-				+0.1
30,750	+				+0.4
30,750	+				-0.3
30,750	+				+0.3
30,750	+				+0.3
30,750	+				-1.6
30,750	+				-0.4
30,750	+				-1.0
30,750	+				-0.1
30,750	+				+1.4
30,750	+				-1.2
30,750	+				-1.0
30,750	+				-0.0
30,750	+				-1.7
30,750	+				+0.2
30,758	+				+1.1
30,758	+				-1.0
30,758	+				-1.4
30,758	-				+0.2
30,758	-				-0.1
30,758	-				-0.4
30,758	-				+0.9
30,758	-				-0.5
30,758	-				-0.1
30,758	-				+0.9
30,758	-				+0.4
30,758	-				+1.2
30,758	-				+0.6
30,758	-				-0.4
30,758	-				-0.9
30,758	-				-0.0
30,758	-				-0.0
30,758	-				+0.1
30,758	-				+1.2
30,765	+				-0.7
30,766	-				-0.2
30,766	-				-0.1
30,766	-				-1.1
30,766	-				-0.2
30,795	+				-3.9
30,795	+				-2.5
30,810	-				+0.4
30,818	+				-3.1
30,826	-				-0.6
30,874	-		SOA0040	0.17	-0.2
30,919	+		SOA0040	0.35	-0.6
30,919	+		SOA0040	0.35	-2.2
30,919	+		SOA0040	0.35	-3.1
30,923	+		SOA0040	0.36	-2.5
30,933	+		SOA0040	0.40	-3.2
30,934	+		SOA0040	0.40	-3.4
30,967	-		SOA0040	0.54	-1.9
31,058	+				+1.4
31,065	+				-0.2
31,065	+				+1.0
31,065	+				+0.6
31,065	+				-0.3
31,070	+				+0.9
31,070	+				-0.9
31,070	+				-0.1
31,070	+				+0.3
31,073	+				+1.0
31,073	-				-0.6
31,078	-				+1.3
31,088	+				+0.2
31,095	-				+1.1
31,098	+				-0.4
31,098	+				-0.1
31,098	+				+1.2
31,098	+				-0.7
31,098	+				+0.2
31,102	+				-0.3
31,102	+				+1.7
31,106	-				+0.5
31,106	-				+0.9
31,106	-				+0.1
31,106	-				+0.8
31,106	-				+0.8
31,106	-				-0.2
31,106	-				+0.2
31,107	+				-0.1
31,108	+				+0.2
31,108	+				+1.4
31,108	+				-1.2
31,108	+				+0.4
31,108	+				-0.2
31,108	+				-0.5
31,108	+				+0.5
31,108	+				-0.0
31,108	+				+0.7
31,109	+		SOA0041	0.10	-0.2
31,109	+		SOA0041	0.10	-1.0
31,109	+		SOA0041	0.10	-0.8
31,109	+		SOA0041	0.10	+0.5
31,109	+		SOA0041	0.10	-0.2
31,109	+		SOA0041	0.10	-0.2
31,109	+		SOA0041	0.10	-1.0
31,109	+		SOA0041	0.10	-0.3
31,114	+		SOA0041	0.12	-0.6
31,114	+		SOA0041	0.12	+0.5
31,115	-		SOA0041	0.12	+0.7
31,116	-		SOA0041	0.12	-0.6
31,116	-		SOA0041	0.12	+0.4
31,116	-		SOA0041	0.12	+0.9
31,116	-		SOA0041	0.12	+0.7
31,116	-		SOA0041	0.12	+0.4
31,116	-		SOA0041	0.12	+1.1
31,116	-		SOA0041	0.12	+0.7
31,116	-		SOA0041	0.12	-0.4
31,116	-		SOA0041	0.12	+1.1
31,117	-		SOA0041	0.13	+2.0
31,117	-		SOA0041	0.13	+1.0
31,117	-		SOA0041	0.13	+0.8
31,117	-		SOA0041	0.13	+0.4
31,117	-		SOA0041	0.13	-1.2
31,117	-		SOA0041	0.13	+1.1
31,117	-		SOA0041	0.13	+0.8
31,122	-		SOA0041	0.14	+0.5
31,122	-		SOA0041	0.14	+0.5
31,122	-		SOA0041	0.14	+1.1
31,122	-		SOA0041	0.14	+1.4
31,122	-		SOA0041	0.14	-2.2
31,143	+		SOA0041	0.21	+1.0
31,143	+		SOA0041	0.21	+0.1
31,143	+		SOA0041	0.21	-0.2
31,143	+		SOA0041	0.21	-0.5
31,151	-		SOA0041	0.23	+0.2
31,151	-		SOA0041	0.23	+0.4
31,151	-		SOA0041	0.23	+0.1
31,153	+		SOA0041	0.24	+0.5
31,160	+		SOA0041	0.26	+0.5
31,163	-		SOA0041	0.27	-0.5
31,173	+		SOA0041	0.30	+0.4
31,174	+		SOA0041	0.31	-0.4
31,174	+		SOA0041	0.31	+2.2
31,174	+		SOA0041	0.31	-0.3
31,174	+		SOA0041	0.31	+0.4
31,174	+		SOA0041	0.31	-0.2
31,174	+		SOA0041	0.31	-0.1
31,174	+		SOA0041	0.31	+0.1
31,174	+		SOA0041	0.31	+0.7
31,174	+		SOA0041	0.31	+0.4
31,174	+		SOA0041	0.31	+1.1
31,182	-		SOA0041	0.33	+0.9
31,182	-		SOA0041	0.33	+0.8
31,182	-		SOA0041	0.33	+0.0
31,182	-		SOA0041	0.33	+0.9
31,182	-		SOA0041	0.33	+0.8
31,182	-		SOA0041	0.33	-0.6
31,182	-		SOA0041	0.33	+0.6
31,182	-		SOA0041	0.33	+0.7
31,182	-		SOA0041	0.33	-0.3
31,187	+		SOA0041	0.35	+1.0
31,187	+		SOA0041	0.35	+0.4
31,187	+		SOA0041	0.35	+0.5
31,187	+		SOA0041	0.35	-0.6
31,187	+		SOA0041	0.35	-0.3
31,187	+		SOA0041	0.35	-0.1
31,187	+		SOA0041	0.35	-1.6
31,187	+		SOA0041	0.35	-0.0
31,187	+		SOA0041	0.35	-0.4
31,187	+		SOA0041	0.35	+0.4
31,187	+		SOA0041	0.35	+0.9
31,187	+		SOA0041	0.35	+0.9
31,187	+		SOA0041	0.35	+0.1
31,195	+				+0.4
31,195	-		SOA0041	0.37	+0.7
31,195	-		SOA0041	0.37	+0.3
31,195	-		SOA0041	0.37	+0.8
31,195	-		SOA0041	0.37	+1.2
31,195	-		SOA0041	0.37	+0.4
31,195	-		SOA0041	0.37	-0.1
31,195	-		SOA0041	0.37	-0.3
31,195	-		SOA0041	0.37	+0.7
31,195	-		SOA0041	0.37	-0.9
31,195	-		SOA0041	0.37	+1.4
31,202	-		SOA0041	0.39	+0.3
31,209	+		SOA0041	0.42	-1.4
31,209	+		SOA0041	0.42	-0.9
31,209	+		SOA0041	0.42	-0.2
31,209	+		SOA0041	0.42	+0.2
31,209	+		SOA0041	0.42	+0.1
31,216	+		SOA0041	0.44	-0.2
31,216	+		SOA0041	0.44	+0.4
31,217	-		SOA0041	0.44	+0.2
31,217	-		SOA0041	0.44	+0.4
31,217	-		SOA0041	0.44	-0.8
31,217	-		SOA0041	0.44	+0.7
31,217	-		SOA0041	0.44	+0.5
31,217	-		SOA0041	0.44	-1.7
31,222	+		SOA0041	0.46	-1.1
31,222	+		SOA0041	0.46	+1.1
31,222	+		SOA0041	0.46	+2.0
31,222	+		SOA0041	0.46	-0.4
31,222	+		SOA0041	0.46	-0.8
31,222	+		SOA0041	0.46	-0.1
31,222	+		SOA0041	0.46	+0.2
31,222	+		SOA0041	0.46	+0.1
31,222	+		SOA0041	0.46	-0.8
31,222	+		SOA0041	0.46	+0.2
31,222	+		SOA0041	0.46	+0.4
31,222	+		SOA0041	0.46	+0.5
31,222	+		SOA0041	0.46	+0.1
31,222	+		SOA0041	0.46	-0.9
31,222	+		SOA0041	0.46	+1.7
31,222	+		SOA0041	0.46	+0.7
31,222	+		SOA0041	0.46	-0.0
31,222	+		SOA0041	0.46	-0.3
31,222	+		SOA0041	0.46	-0.1
31,222	+		SOA0041	0.46	+0.7
31,222	+		SOA0041	0.46	+0.9
31,222	+		SOA0041	0.46	+0.4
31,222	+		SOA0041	0.46	+0.0
31,222	+		SOA0041	0.46	+0.8
31,222	+		SOA0041	0.46	+0.0
31,222	+		SOA0041	0.46	+0.1
31,222	+		SOA0041	0.46	+1.1
31,222	+		SOA0041	0.46	-0.2
31,222	+		SOA0041	0.46	+0.5
31,222	+		SOA0041	0.46	-0.0
31,222	+		SOA0041	0.46	-0.2
31,222	+		SOA0041	0.46	+0.8
31,222	+		SOA0041	0.46	-2.1
31,222	+		SOA0041	0.46	+0.4
31,222	+		SOA0041	0.46	-0.8
31,222	+		SOA0041	0.46	-0.4
31,222	+		SOA0041	0.46	+0.0
31,222	+		SOA0041	0.46	+0.0
31,222	+		SOA0041	0.46	+0.2
31,222	+		SOA0041	0.46	+0.3
31,222	+		SOA0041	0.46	+0.1
31,222	+		SOA0041	0.46	+1.4
31,222	+		SOA0041	0.46	-0.6
31,222	+		SOA0041	0.46	-1.5
31,223	+		SOA0041	0.46	+1.1
31,223	+		SOA0041	0.46	-0.9
31,223	+		SOA0041	0.46	-0.3
31,223	+		SOA0041	0.46	+0.5
31,223	+		SOA0041	0.46	+0.1
31,223	+		SOA0041	0.46	+0.5
31,223	+		SOA0041	0.46	+0.1
31,223	+		SOA0041	0.46	+1.6
31,223	+		SOA0041	0.46	+0.5
31,223	+		SOA0041	0.46	+1.4
31,223	+		SOA0041	0.46	+0.7
31,223	+		SOA0041	0.46	+3.7
31,223	+		SOA0041	0.46	+0.4
31,223	+		SOA0041	0.46	-0.3
31,223	+		SOA0041	0.46	-1.0
31,223	+		SOA0041	0.46	-0.7
31,223	+		SOA0041	0.46	-0.3
31,223	+		SOA0041	0.46	+0.5
31,223	+		SOA0041	0.46	+0.3
31,223	+		SOA0041	0.46	+0.8
31,223	+		SOA0041	0.46	-0.5
31,223	+		SOA0041	0.46	-0.6
31,223	+		SOA0041	0.46	+0.8
31,223	+		SOA0041	0.46	-0.7
31,223	+		SOA0041	0.46	+0.1
31,223	+		SOA0041	0.46	-0.6
31,223	+		SOA0041	0.46	+0.2
31,223	+		SOA0041	0.46	+0.0
31,223	+		SOA0041	0.46	-0.1
31,223	+		SOA0041	0.46	+1.0
31,223	+		SOA0041	0.46	+0.6
31,223	+		SOA0041	0.46	+0.1
31,223	+		SOA0041	0.46	-0.1
31,223	+		SOA0041	0.46	-0.3
31,223	+		SOA0041	0.46	+0.4
31,223	+		SOA0041	0.46	+1.1
31,223	+		SOA0041	0.46	+0.1
31,223	+		SOA0041	0.46	+0.6
31,223	+		SOA0041	0.46	+0.5
31,223	+		SOA0041	0.46	+1.1
31,223	+		SOA0041	0.46	+0.1
31,223	+		SOA0041	0.46	-1.5
31,223	+		SOA0041	0.46	+1.1
31,223	+		SOA0041	0.46	-0.2
31,223	+		SOA0041	0.46	+0.2
31,223	+		SOA0041	0.46	+1.2
31,223	+		SOA0041	0.46	+0.4
31,223	+		SOA0041	0.46	-0.2
31,223	+		SOA0041	0.46	-0.2
31,223	+		SOA0041	0.46	+0.4
31,223	+		SOA0041	0.46	-0.4
31,223	+		SOA0041	0.46	-0.8
31,223	+		SOA0041	0.46	-0.6
31,223	+		SOA0041	0.46	+0.2
31,223	+		SOA0041	0.46	+0.1
31,223	+		SOA0041	0.46	+1.4
31,223	+		SOA0041	0.46	-0.3
31,223	+		SOA0041	0.46	-0.6
31,223	+		SOA0041	0.46	-0.6
31,223	+		SOA0041	0.46	-0.9
31,223	+		SOA0041	0.46	-0.9
31,223	+		SOA0041	0.46	-0.1
31,223	+		SOA0041	0.46	+0.6
31,223	+		SOA0041	0.46	-1.1
31,223	+		SOA0041	0.46	+0.4
31,223	+		SOA0041	0.46	+0.4
31,223	+		SOA0041	0.46	+1.3
31,223	+		SOA0041	0.46	+0.3
31,223	+		SOA0041	0.46	-1.3
31,223	+		SOA0041	0.46	+0.8
31,223	+		SOA0041	0.46	+0.7
31,223	+		SOA0041	0.46	-0.6
31,223	+		SOA0041	0.46	+0.5
31,223	+		SOA0041	0.46	+0.2
31,223	+		SOA0041	0.46	-0.1
31,223	+		SOA0041	0.46	+2.0
31,223	+		SOA0041	0.46	-0.1
31,223	+		SOA0041	0.46	+0.2
31,223	+		SOA0041	0.46	+0.2
31,223	+		SOA0041	0.46	+0.0
31,223	+		SOA0041	0.46	+1.1
31,223	+		SOA0041	0.46	-0.4
31,223	+		SOA0041	0.46	+2.4
31,223	+		SOA0041	0.46	+0.6
31,223	+		SOA0041	0.46	-0.9
31,223	+		SOA0041	0.46	+1.5
31,223	+		SOA0041	0.46	+0.3
31,223	+		SOA0041	0.46	+1.7
31,223	+		SOA0041	0.46	+0.9
31,223	+		SOA0041	0.46	-0.6
31,223	+		SOA0041	0.46	+1.2
31,223	+		SOA0041	0.46	+0.3
31,223	+		SOA0041	0.46	-0.6
31,223	+		SOA0041	0.46	+0.6
31,223	+		SOA0041	0.46	+0.2
31,223	+		SOA0041	0.46	+1.4
31,223	+		SOA0041	0.46	+0.4
31,223	+		SOA0041	0.46	+0.0
31,223	+		SOA0041	0.46	+0.1
31,223	+		SOA0041	0.46	-1.9
31,223	+		SOA0041	0.46	-0.8
31,223	+		SOA0041	0.46	+0.2
31,223	+		SOA0041	0.46	+0.8
31,223	+		SOA0041	0.46	+0.0
31,223	+		SOA0041	0.46	-0.2
31,223	+		SOA0041	0.46	-0.6
31,223	+		SOA0041	0.46	+0.7
31,223	+		SOA0041	0.46	+0.2
31,223	+		SOA0041	0.46	+0.7
31,223	+		SOA0041	0.46	+0.4
31,223	+		SOA0041	0.46	-0.3
31,223	+		SOA0041	0.46	+0.4
31,223	+		SOA0041	0.46	-0.5
31,223	+		SOA0041	0.46	+1.6
31,223	+		SOA0041	0.46	+0.4
31,223	+		SOA0041	0.46	+0.2
31,223	+		SOA0041	0.46	+0.0
31,223	+		SOA0041	0.46	-0.4
31,223	+		SOA0041	0.46	+1.0
31,223	+		SOA0041	0.46	+0.4
31,223	+		SOA0041	0.46	+1.0
31,223	+		SOA0041	0.46	-0.0
31,223	+		SOA0041	0.46	-0.5
31,223	+		SOA0041	0.46	+0.6
31,223	+		SOA0041	0.46	+1.0
31,223	+		SOA0041	0.46	+0.1
31,223	+		SOA0041	0.46	+0.7
31,223	+		SOA0041	0.46	+0.6
31,223	+		SOA0041	0.46	-0.2
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31,910	+		SOA0042	0.76	+0.1
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31,951	+		SOA0042	0.84	-2.2
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31,979	+				-0.3
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