Strain Fitness in Shewanella oneidensis MR-1 around SO0670

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0668 and SO0669 are separated by 147 nucleotidesSO0669 and SO0670 are separated by 44 nucleotidesSO0670 and SO0671 are separated by 215 nucleotidesSO0671 and SO0672 are separated by 45 nucleotides SO0668: SO0668 - prophage MuSo1, F protein, putative (NCBI ptt file), at 686,773 to 688,110 SO0668 SO0669: SO0669 - prophage MuSo1, virion morphogenesis protein (NCBI ptt file), at 688,258 to 688,710 SO0669 SO0670: SO0670 - hypothetical protein (NCBI ptt file), at 688,755 to 689,648 SO0670 SO0671: SO0671 - hypothetical protein (NCBI ptt file), at 689,864 to 690,100 SO0671 SO0672: SO0672 - hypothetical protein (NCBI ptt file), at 690,146 to 690,760 SO0672 Position (kb) 688 689 690Strain fitness (log2 ratio) -2 -1 0 1 2at 687.755 kb on + strand, within SO0668at 687.832 kb on - strand, within SO0668at 687.897 kb on + strand, within SO0668at 687.897 kb on + strand, within SO0668at 687.897 kb on + strand, within SO0668at 687.905 kb on - strand, within SO0668at 687.905 kb on - strand, within SO0668at 687.936 kb on + strand, within SO0668at 687.952 kb on + strand, within SO0668at 687.971 kb on + strand, within SO0668at 687.971 kb on + strand, within SO0668at 687.972 kb on + strand, within SO0668at 687.974 kb on - strand, within SO0668at 687.980 kb on - strandat 687.992 kb on - strandat 688.098 kb on + strandat 688.156 kb on - strandat 688.214 kb on + strandat 688.226 kb on + strandat 688.231 kb on + strandat 688.374 kb on - strand, within SO0669at 688.420 kb on + strand, within SO0669at 688.442 kb on - strand, within SO0669at 688.452 kb on + strand, within SO0669at 688.489 kb on + strand, within SO0669at 688.499 kb on + strand, within SO0669at 688.571 kb on - strand, within SO0669at 688.648 kb on - strand, within SO0669at 688.651 kb on + strand, within SO0669at 688.659 kb on - strand, within SO0669at 688.659 kb on - strand, within SO0669at 688.659 kb on - strand, within SO0669at 688.674 kb on + strandat 688.674 kb on + strandat 688.704 kb on - strandat 688.757 kb on + strandat 688.774 kb on - strandat 688.802 kb on + strandat 688.836 kb on - strandat 688.885 kb on + strand, within SO0670at 688.894 kb on - strand, within SO0670at 688.914 kb on + strand, within SO0670at 688.955 kb on + strand, within SO0670at 688.956 kb on + strand, within SO0670at 688.956 kb on + strand, within SO0670at 688.964 kb on - strand, within SO0670at 688.972 kb on + strand, within SO0670at 688.972 kb on + strand, within SO0670at 688.999 kb on - strand, within SO0670at 689.003 kb on + strand, within SO0670at 689.011 kb on - strand, within SO0670at 689.188 kb on + strand, within SO0670at 689.203 kb on - strand, within SO0670at 689.237 kb on + strand, within SO0670at 689.242 kb on + strand, within SO0670at 689.282 kb on + strand, within SO0670at 689.287 kb on + strand, within SO0670at 689.287 kb on + strand, within SO0670at 689.295 kb on - strand, within SO0670at 689.295 kb on - strand, within SO0670at 689.342 kb on + strand, within SO0670at 689.350 kb on - strand, within SO0670at 689.365 kb on - strand, within SO0670at 689.365 kb on - strand, within SO0670at 689.420 kb on + strand, within SO0670at 689.428 kb on - strand, within SO0670at 689.499 kb on - strand, within SO0670at 689.602 kb on + strandat 689.603 kb on - strandat 689.610 kb on - strandat 689.763 kb on + strandat 689.766 kb on - strandat 689.788 kb on - strandat 689.792 kb on + strandat 689.811 kb on - strandat 689.819 kb on + strandat 689.928 kb on + strand, within SO0671at 689.928 kb on + strand, within SO0671at 689.930 kb on + strand, within SO0671at 689.930 kb on + strand, within SO0671at 689.936 kb on - strand, within SO0671at 689.938 kb on + strand, within SO0671at 689.938 kb on - strand, within SO0671at 689.938 kb on - strand, within SO0671at 689.945 kb on - strand, within SO0671at 689.945 kb on - strand, within SO0671at 689.959 kb on - strand, within SO0671at 690.002 kb on - strand, within SO0671at 690.003 kb on - strand, within SO0671at 690.003 kb on - strand, within SO0671at 690.019 kb on + strand, within SO0671at 690.078 kb on + strandat 690.079 kb on + strandat 690.079 kb on + strandat 690.087 kb on - strandat 690.087 kb on - strandat 690.087 kb on - strandat 690.090 kb on + strandat 690.098 kb on - strandat 690.098 kb on - strandat 690.169 kb on + strandat 690.175 kb on - strandat 690.175 kb on - strandat 690.177 kb on - strandat 690.179 kb on + strandat 690.179 kb on + strandat 690.187 kb on - strandat 690.187 kb on - strandat 690.187 kb on - strandat 690.187 kb on - strandat 690.187 kb on - strandat 690.191 kb on + strandat 690.197 kb on + strandat 690.221 kb on - strand, within SO0672at 690.222 kb on + strand, within SO0672at 690.231 kb on - strand, within SO0672at 690.237 kb on + strand, within SO0672at 690.245 kb on - strand, within SO0672at 690.253 kb on - strand, within SO0672at 690.255 kb on - strand, within SO0672at 690.255 kb on - strand, within SO0672at 690.255 kb on - strand, within SO0672at 690.255 kb on - strand, within SO0672at 690.255 kb on - strand, within SO0672at 690.260 kb on - strand, within SO0672at 690.262 kb on + strand, within SO0672at 690.272 kb on - strand, within SO0672at 690.302 kb on + strand, within SO0672at 690.307 kb on + strand, within SO0672at 690.322 kb on + strand, within SO0672at 690.330 kb on - strand, within SO0672at 690.330 kb on - strand, within SO0672at 690.330 kb on - strand, within SO0672at 690.332 kb on + strand, within SO0672at 690.352 kb on - strand, within SO0672at 690.362 kb on - strand, within SO0672at 690.367 kb on + strand, within SO0672at 690.369 kb on - strand, within SO0672at 690.406 kb on - strand, within SO0672at 690.408 kb on + strand, within SO0672at 690.408 kb on + strand, within SO0672at 690.451 kb on + strand, within SO0672at 690.459 kb on - strand, within SO0672at 690.464 kb on + strand, within SO0672at 690.464 kb on + strand, within SO0672at 690.469 kb on + strand, within SO0672at 690.469 kb on + strand, within SO0672at 690.469 kb on + strand, within SO0672at 690.469 kb on + strand, within SO0672at 690.472 kb on - strand, within SO0672at 690.472 kb on - strand, within SO0672at 690.472 kb on - strand, within SO0672at 690.472 kb on - strand, within SO0672at 690.475 kb on + strand, within SO0672at 690.477 kb on - strand, within SO0672at 690.486 kb on + strand, within SO0672at 690.503 kb on + strand, within SO0672at 690.514 kb on - strand, within SO0672at 690.521 kb on - strand, within SO0672at 690.541 kb on + strand, within SO0672at 690.580 kb on + strand, within SO0672at 690.580 kb on + strand, within SO0672at 690.636 kb on + strand, within SO0672at 690.636 kb on + strand, within SO0672at 690.636 kb on + strand, within SO0672at 690.636 kb on + strand, within SO0672at 690.636 kb on + strand, within SO0672at 690.642 kb on - strand, within SO0672at 690.642 kb on - strand, within SO0672at 690.643 kb on + strand, within SO0672

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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687,755 + SO0668 0.73 +0.9
687,832 - SO0668 0.79 -0.0
687,897 + SO0668 0.84 -0.8
687,897 + SO0668 0.84 -0.2
687,897 + SO0668 0.84 -0.6
687,905 - SO0668 0.85 +0.8
687,905 - SO0668 0.85 -0.4
687,936 + SO0668 0.87 +0.0
687,952 + SO0668 0.88 -0.2
687,971 + SO0668 0.90 -0.0
687,971 + SO0668 0.90 -0.3
687,972 + SO0668 0.90 +0.2
687,974 - SO0668 0.90 -0.3
687,980 - -0.4
687,992 - +2.3
688,098 + +0.8
688,156 - -0.4
688,214 + -0.1
688,226 + +1.6
688,231 + -1.3
688,374 - SO0669 0.26 -0.6
688,420 + SO0669 0.36 -0.1
688,442 - SO0669 0.41 -0.3
688,452 + SO0669 0.43 -0.1
688,489 + SO0669 0.51 -0.1
688,499 + SO0669 0.53 -0.0
688,571 - SO0669 0.69 -0.5
688,648 - SO0669 0.86 +0.4
688,651 + SO0669 0.87 +0.0
688,659 - SO0669 0.89 -0.1
688,659 - SO0669 0.89 -0.5
688,659 - SO0669 0.89 +0.2
688,674 + -0.2
688,674 + +0.1
688,704 - +0.6
688,757 + -0.1
688,774 - +0.4
688,802 + +0.7
688,836 - -0.1
688,885 + SO0670 0.15 +1.4
688,894 - SO0670 0.16 +2.0
688,914 + SO0670 0.18 +0.3
688,955 + SO0670 0.22 +1.0
688,956 + SO0670 0.22 +2.0
688,956 + SO0670 0.22 -0.5
688,964 - SO0670 0.23 -1.0
688,972 + SO0670 0.24 +0.2
688,972 + SO0670 0.24 +0.7
688,999 - SO0670 0.27 -0.3
689,003 + SO0670 0.28 +1.3
689,011 - SO0670 0.29 +0.2
689,188 + SO0670 0.48 +0.3
689,203 - SO0670 0.50 +0.9
689,237 + SO0670 0.54 -0.2
689,242 + SO0670 0.54 -0.1
689,282 + SO0670 0.59 -0.0
689,287 + SO0670 0.60 +1.0
689,287 + SO0670 0.60 +0.1
689,295 - SO0670 0.60 +0.5
689,295 - SO0670 0.60 +1.2
689,342 + SO0670 0.66 -0.6
689,350 - SO0670 0.67 +0.1
689,365 - SO0670 0.68 +0.2
689,365 - SO0670 0.68 +0.5
689,420 + SO0670 0.74 -0.1
689,428 - SO0670 0.75 +0.7
689,499 - SO0670 0.83 +0.0
689,602 + -0.2
689,603 - -0.1
689,610 - +0.1
689,763 + +0.4
689,766 - +0.6
689,788 - +1.8
689,792 + -0.7
689,811 - -0.2
689,819 + +0.1
689,928 + SO0671 0.27 -0.2
689,928 + SO0671 0.27 +0.3
689,930 + SO0671 0.28 +0.4
689,930 + SO0671 0.28 -0.0
689,936 - SO0671 0.30 +0.2
689,938 + SO0671 0.31 +0.0
689,938 - SO0671 0.31 -0.4
689,938 - SO0671 0.31 -0.3
689,945 - SO0671 0.34 +0.5
689,945 - SO0671 0.34 +0.1
689,959 - SO0671 0.40 -0.8
690,002 - SO0671 0.58 -0.2
690,003 - SO0671 0.59 +0.2
690,003 - SO0671 0.59 +0.7
690,019 + SO0671 0.65 +0.2
690,078 + +0.2
690,079 + +0.4
690,079 + +0.5
690,087 - -0.6
690,087 - -1.7
690,087 - -0.3
690,090 + +0.4
690,098 - +0.3
690,098 - +0.0
690,169 + +0.2
690,175 - -1.1
690,175 - -0.9
690,177 - -0.4
690,179 + -0.2
690,179 + +0.4
690,187 - +0.4
690,187 - +0.5
690,187 - -0.3
690,187 - -0.9
690,187 - -0.3
690,191 + +0.1
690,197 + +0.3
690,221 - SO0672 0.12 +0.8
690,222 + SO0672 0.12 +0.1
690,231 - SO0672 0.14 +0.6
690,237 + SO0672 0.15 -0.4
690,245 - SO0672 0.16 -0.3
690,253 - SO0672 0.17 +0.1
690,255 - SO0672 0.18 +0.4
690,255 - SO0672 0.18 +0.6
690,255 - SO0672 0.18 +0.1
690,255 - SO0672 0.18 +0.3
690,255 - SO0672 0.18 -0.3
690,260 - SO0672 0.19 -0.3
690,262 + SO0672 0.19 +0.6
690,272 - SO0672 0.20 -0.4
690,302 + SO0672 0.25 +0.1
690,307 + SO0672 0.26 +0.3
690,322 + SO0672 0.29 +0.2
690,330 - SO0672 0.30 -0.2
690,330 - SO0672 0.30 +0.2
690,330 - SO0672 0.30 +0.0
690,332 + SO0672 0.30 -0.2
690,352 - SO0672 0.33 +1.5
690,362 - SO0672 0.35 +0.4
690,367 + SO0672 0.36 -0.1
690,369 - SO0672 0.36 +0.4
690,406 - SO0672 0.42 -0.1
690,408 + SO0672 0.43 -0.3
690,408 + SO0672 0.43 +0.4
690,451 + SO0672 0.50 +0.3
690,459 - SO0672 0.51 +0.4
690,464 + SO0672 0.52 +0.2
690,464 + SO0672 0.52 +1.8
690,469 + SO0672 0.53 +0.4
690,469 + SO0672 0.53 -0.8
690,469 + SO0672 0.53 +0.2
690,469 + SO0672 0.53 -0.8
690,472 - SO0672 0.53 +0.6
690,472 - SO0672 0.53 -0.2
690,472 - SO0672 0.53 -0.9
690,472 - SO0672 0.53 -0.0
690,475 + SO0672 0.53 +0.2
690,477 - SO0672 0.54 -0.1
690,486 + SO0672 0.55 -0.4
690,503 + SO0672 0.58 -0.8
690,514 - SO0672 0.60 -0.5
690,521 - SO0672 0.61 -0.2
690,541 + SO0672 0.64 -1.8
690,580 + SO0672 0.71 -1.7
690,580 + SO0672 0.71 +1.0
690,636 + SO0672 0.80 -0.2
690,636 + SO0672 0.80 -0.1
690,636 + SO0672 0.80 -0.2
690,636 + SO0672 0.80 +0.4
690,636 + SO0672 0.80 +0.1
690,642 - SO0672 0.81 +0.2
690,642 - SO0672 0.81 +0.5
690,643 + SO0672 0.81 +0.1

Or see this region's nucleotide sequence