Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24135

Experiment: 36hr Phyto Lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS24130 and BPHYT_RS24135 are separated by 30 nucleotidesBPHYT_RS24135 and BPHYT_RS24140 are separated by 222 nucleotides BPHYT_RS24130: BPHYT_RS24130 - tartronate semialdehyde reductase, at 981,048 to 981,941 _RS24130 BPHYT_RS24135: BPHYT_RS24135 - alpha-dehydro-beta-deoxy-D-glucarate aldolase, at 981,972 to 982,772 _RS24135 BPHYT_RS24140: BPHYT_RS24140 - 2,5-dioxovalerate dehydrogenase, at 982,995 to 984,578 _RS24140 Position (kb) 981 982 983Strain fitness (log2 ratio) -1 0 1 2at 981.744 kb on - strandat 981.923 kb on + strandat 982.082 kb on + strand, within BPHYT_RS24135at 982.305 kb on + strand, within BPHYT_RS24135at 982.305 kb on + strand, within BPHYT_RS24135at 982.736 kb on + strandat 982.754 kb on - strandat 982.885 kb on - strandat 982.885 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr Phyto Lib only
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981,744 - +0.8
981,923 + -0.6
982,082 + BPHYT_RS24135 0.14 -0.5
982,305 + BPHYT_RS24135 0.42 +2.0
982,305 + BPHYT_RS24135 0.42 +0.1
982,736 + +0.0
982,754 - -1.6
982,885 - -0.7
982,885 - -1.1

Or see this region's nucleotide sequence