Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24125

Experiment: 36hr Phyto Lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS24120 and BPHYT_RS24125 are separated by 164 nucleotidesBPHYT_RS24125 and BPHYT_RS24130 are separated by 241 nucleotides BPHYT_RS24120: BPHYT_RS24120 - hexuronate transporter ExuT, at 977,334 to 978,626 _RS24120 BPHYT_RS24125: BPHYT_RS24125 - endopolygalacturonase, at 978,791 to 980,806 _RS24125 BPHYT_RS24130: BPHYT_RS24130 - tartronate semialdehyde reductase, at 981,048 to 981,941 _RS24130 Position (kb) 978 979 980 981Strain fitness (log2 ratio) -2 -1 0 1at 977.837 kb on - strand, within BPHYT_RS24120at 978.087 kb on + strand, within BPHYT_RS24120at 978.184 kb on - strand, within BPHYT_RS24120at 978.370 kb on - strand, within BPHYT_RS24120at 978.725 kb on - strandat 978.725 kb on - strandat 978.876 kb on + strandat 979.348 kb on + strand, within BPHYT_RS24125at 979.734 kb on + strand, within BPHYT_RS24125at 979.791 kb on + strand, within BPHYT_RS24125at 979.903 kb on - strand, within BPHYT_RS24125at 980.767 kb on - strandat 981.744 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr Phyto Lib only
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977,837 - BPHYT_RS24120 0.39 +0.0
978,087 + BPHYT_RS24120 0.58 -0.6
978,184 - BPHYT_RS24120 0.66 -0.4
978,370 - BPHYT_RS24120 0.80 -1.8
978,725 - -0.7
978,725 - +0.2
978,876 + -0.2
979,348 + BPHYT_RS24125 0.28 -1.7
979,734 + BPHYT_RS24125 0.47 +0.4
979,791 + BPHYT_RS24125 0.50 -1.1
979,903 - BPHYT_RS24125 0.55 -0.3
980,767 - -0.6
981,744 - +0.8

Or see this region's nucleotide sequence