Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10040

Experiment: 36hr Phyto Lib only

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS10035 and BPHYT_RS10040 are separated by 359 nucleotidesBPHYT_RS10040 and BPHYT_RS10045 are separated by 131 nucleotides BPHYT_RS10035: BPHYT_RS10035 - DSBA oxidoreductase, at 2,285,155 to 2,286,717 _RS10035 BPHYT_RS10040: BPHYT_RS10040 - hypothetical protein, at 2,287,077 to 2,287,283 _RS10040 BPHYT_RS10045: BPHYT_RS10045 - phosphohydrolase, at 2,287,415 to 2,288,110 _RS10045 Position (kb) 2287 2288Strain fitness (log2 ratio) -1 0 1 2at 2286.525 kb on + strand, within BPHYT_RS10035at 2286.859 kb on + strandat 2286.944 kb on + strandat 2286.944 kb on + strandat 2286.945 kb on - strandat 2286.945 kb on - strandat 2287.070 kb on + strandat 2287.206 kb on + strand, within BPHYT_RS10040at 2287.416 kb on + strandat 2287.904 kb on - strand, within BPHYT_RS10045

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr Phyto Lib only
remove
2,286,525 + BPHYT_RS10035 0.88 -0.9
2,286,859 + -0.8
2,286,944 + +2.6
2,286,944 + -1.3
2,286,945 - +0.0
2,286,945 - -0.8
2,287,070 + +0.6
2,287,206 + BPHYT_RS10040 0.62 -1.4
2,287,416 + +0.8
2,287,904 - BPHYT_RS10045 0.70 -0.2

Or see this region's nucleotide sequence