Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04040

Experiment: 36hr Phyto Lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04035 and BPHYT_RS04040 are separated by 14 nucleotidesBPHYT_RS04040 and BPHYT_RS04045 are separated by 281 nucleotides BPHYT_RS04035: BPHYT_RS04035 - transferase, at 919,436 to 920,656 _RS04035 BPHYT_RS04040: BPHYT_RS04040 - hypothetical protein, at 920,671 to 922,146 _RS04040 BPHYT_RS04045: BPHYT_RS04045 - acyltransferase, at 922,428 to 923,582 _RS04045 Position (kb) 920 921 922 923Strain fitness (log2 ratio) -1 0 1 2at 920.322 kb on + strand, within BPHYT_RS04035at 920.323 kb on - strand, within BPHYT_RS04035at 920.329 kb on - strand, within BPHYT_RS04035at 920.329 kb on - strand, within BPHYT_RS04035at 921.252 kb on - strand, within BPHYT_RS04040at 921.281 kb on - strand, within BPHYT_RS04040at 921.385 kb on + strand, within BPHYT_RS04040at 921.468 kb on + strand, within BPHYT_RS04040at 922.086 kb on - strandat 922.118 kb on - strandat 922.295 kb on + strandat 922.435 kb on + strandat 922.541 kb on + strandat 922.551 kb on + strand, within BPHYT_RS04045at 922.551 kb on + strand, within BPHYT_RS04045at 922.729 kb on - strand, within BPHYT_RS04045at 922.732 kb on - strand, within BPHYT_RS04045at 922.816 kb on - strand, within BPHYT_RS04045at 923.073 kb on + strand, within BPHYT_RS04045

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr Phyto Lib only
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920,322 + BPHYT_RS04035 0.73 -0.5
920,323 - BPHYT_RS04035 0.73 +0.9
920,329 - BPHYT_RS04035 0.73 -0.8
920,329 - BPHYT_RS04035 0.73 +1.8
921,252 - BPHYT_RS04040 0.39 -0.7
921,281 - BPHYT_RS04040 0.41 +0.7
921,385 + BPHYT_RS04040 0.48 -0.5
921,468 + BPHYT_RS04040 0.54 -1.5
922,086 - +2.6
922,118 - -0.3
922,295 + -0.4
922,435 + -0.2
922,541 + +0.9
922,551 + BPHYT_RS04045 0.11 -0.8
922,551 + BPHYT_RS04045 0.11 -0.8
922,729 - BPHYT_RS04045 0.26 -0.4
922,732 - BPHYT_RS04045 0.26 +2.0
922,816 - BPHYT_RS04045 0.34 -0.1
923,073 + BPHYT_RS04045 0.56 -1.7

Or see this region's nucleotide sequence