Experiment: 36hr Phyto Lib only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02350 and BPHYT_RS02355 are separated by 561 nucleotides BPHYT_RS02355 and BPHYT_RS02360 are separated by 155 nucleotides BPHYT_RS02360 and BPHYT_RS02365 are separated by 71 nucleotides
BPHYT_RS02350: BPHYT_RS02350 - hypothetical protein, at 538,778 to 539,599
_RS02350
BPHYT_RS02355: BPHYT_RS02355 - ferritin, at 540,161 to 541,033
_RS02355
BPHYT_RS02360: BPHYT_RS02360 - bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase, at 541,189 to 541,671
_RS02360
BPHYT_RS02365: BPHYT_RS02365 - hypothetical protein, at 541,743 to 541,982
_RS02365
Position (kb) 540
541
542 Strain fitness (log2 ratio) -1
0
1 at 539.597 kb on + strand at 539.597 kb on + strand at 539.785 kb on + strand at 539.785 kb on + strand at 539.786 kb on - strand at 539.786 kb on - strand at 539.788 kb on + strand at 539.788 kb on + strand at 539.791 kb on + strand at 539.791 kb on + strand at 539.791 kb on + strand at 539.791 kb on + strand at 539.792 kb on - strand at 539.792 kb on - strand at 539.792 kb on - strand at 539.794 kb on - strand at 539.795 kb on + strand at 539.795 kb on + strand at 539.795 kb on + strand at 539.796 kb on - strand at 539.802 kb on + strand at 539.963 kb on + strand at 540.075 kb on + strand at 540.075 kb on + strand at 540.075 kb on + strand at 540.105 kb on + strand at 540.115 kb on + strand at 540.115 kb on + strand at 540.115 kb on + strand at 540.160 kb on + strand at 541.151 kb on + strand at 541.151 kb on + strand at 541.151 kb on + strand at 541.659 kb on + strand at 541.659 kb on + strand at 541.721 kb on - strand at 541.721 kb on - strand at 541.744 kb on + strand at 541.745 kb on - strand at 541.944 kb on - strand, within BPHYT_RS02365 at 541.959 kb on + strand at 541.960 kb on - strand at 541.960 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr Phyto Lib only remove 539,597 + -0.2 539,597 + -0.5 539,785 + +0.7 539,785 + +0.6 539,786 - -0.8 539,786 - +0.1 539,788 + -0.0 539,788 + +0.6 539,791 + -0.3 539,791 + -1.3 539,791 + -1.3 539,791 + +0.5 539,792 - -0.5 539,792 - +0.0 539,792 - -1.1 539,794 - +0.3 539,795 + -0.7 539,795 + +0.3 539,795 + -0.3 539,796 - +1.6 539,802 + +0.3 539,963 + -1.6 540,075 + +0.4 540,075 + +0.2 540,075 + +0.7 540,105 + -0.8 540,115 + +0.2 540,115 + -1.2 540,115 + +0.3 540,160 + +1.0 541,151 + +0.4 541,151 + -0.5 541,151 + -0.1 541,659 + +0.8 541,659 + -0.4 541,721 - +0.1 541,721 - -0.9 541,744 + +1.0 541,745 - -0.9 541,944 - BPHYT_RS02365 0.84 -1.4 541,959 + -0.0 541,960 - -1.5 541,960 - -0.6
Or see this region's nucleotide sequence