Experiment: 36hr Phyto Lib only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02070 and BPHYT_RS02075 are separated by 700 nucleotides BPHYT_RS02075 and BPHYT_RS02080 are separated by 205 nucleotides
BPHYT_RS02070: BPHYT_RS02070 - hypothetical protein, at 474,239 to 474,784
_RS02070
BPHYT_RS02075: BPHYT_RS02075 - porin, at 475,485 to 476,570
_RS02075
BPHYT_RS02080: BPHYT_RS02080 - LysR family transcriptional regulator, at 476,776 to 477,714
_RS02080
Position (kb) 475
476
477 Strain fitness (log2 ratio) -2
-1
0
1
2 at 474.699 kb on - strand, within BPHYT_RS02070 at 475.291 kb on + strand at 475.316 kb on - strand at 475.316 kb on - strand at 475.330 kb on - strand at 475.360 kb on + strand at 475.593 kb on + strand at 475.593 kb on + strand at 475.594 kb on - strand, within BPHYT_RS02075 at 475.773 kb on + strand, within BPHYT_RS02075 at 475.773 kb on + strand, within BPHYT_RS02075 at 475.815 kb on + strand, within BPHYT_RS02075 at 475.944 kb on + strand, within BPHYT_RS02075 at 475.944 kb on + strand, within BPHYT_RS02075 at 475.944 kb on + strand, within BPHYT_RS02075 at 475.944 kb on + strand, within BPHYT_RS02075 at 475.944 kb on + strand, within BPHYT_RS02075 at 475.944 kb on + strand at 475.971 kb on + strand, within BPHYT_RS02075 at 475.971 kb on + strand, within BPHYT_RS02075 at 476.068 kb on - strand, within BPHYT_RS02075 at 476.068 kb on - strand, within BPHYT_RS02075 at 476.068 kb on - strand, within BPHYT_RS02075 at 476.068 kb on - strand, within BPHYT_RS02075 at 476.125 kb on - strand, within BPHYT_RS02075 at 476.125 kb on - strand, within BPHYT_RS02075 at 476.157 kb on + strand, within BPHYT_RS02075 at 476.158 kb on - strand, within BPHYT_RS02075 at 476.158 kb on - strand, within BPHYT_RS02075 at 476.158 kb on - strand, within BPHYT_RS02075 at 476.163 kb on + strand, within BPHYT_RS02075 at 476.164 kb on - strand, within BPHYT_RS02075 at 476.164 kb on - strand, within BPHYT_RS02075 at 476.263 kb on - strand, within BPHYT_RS02075 at 476.295 kb on + strand, within BPHYT_RS02075 at 476.295 kb on + strand, within BPHYT_RS02075 at 476.301 kb on + strand, within BPHYT_RS02075 at 476.301 kb on + strand, within BPHYT_RS02075 at 476.301 kb on + strand, within BPHYT_RS02075 at 476.301 kb on + strand, within BPHYT_RS02075 at 476.301 kb on + strand, within BPHYT_RS02075 at 476.301 kb on + strand at 476.302 kb on - strand, within BPHYT_RS02075 at 476.302 kb on - strand, within BPHYT_RS02075 at 476.307 kb on + strand, within BPHYT_RS02075 at 476.308 kb on - strand, within BPHYT_RS02075 at 476.308 kb on - strand, within BPHYT_RS02075 at 476.308 kb on - strand, within BPHYT_RS02075 at 476.308 kb on - strand, within BPHYT_RS02075 at 476.458 kb on - strand, within BPHYT_RS02075 at 476.491 kb on - strand at 476.491 kb on - strand at 476.499 kb on + strand at 476.499 kb on + strand at 476.500 kb on - strand at 476.500 kb on - strand at 476.505 kb on + strand at 476.505 kb on + strand at 476.505 kb on + strand at 476.505 kb on + strand at 476.505 kb on + strand at 476.505 kb on + strand at 476.505 kb on + strand at 476.506 kb on - strand at 476.506 kb on - strand at 476.506 kb on - strand at 476.506 kb on - strand at 476.506 kb on - strand at 476.541 kb on + strand at 476.615 kb on + strand at 476.729 kb on - strand at 476.782 kb on - strand at 476.972 kb on - strand, within BPHYT_RS02080 at 477.149 kb on + strand, within BPHYT_RS02080 at 477.149 kb on + strand, within BPHYT_RS02080 at 477.150 kb on - strand, within BPHYT_RS02080 at 477.346 kb on + strand, within BPHYT_RS02080 at 477.346 kb on + strand, within BPHYT_RS02080 at 477.347 kb on - strand, within BPHYT_RS02080 at 477.347 kb on - strand, within BPHYT_RS02080
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr Phyto Lib only remove 474,699 - BPHYT_RS02070 0.84 -0.3 475,291 + -1.6 475,316 - +0.5 475,316 - +1.3 475,330 - +0.0 475,360 + -0.1 475,593 + -0.1 475,593 + -0.1 475,594 - BPHYT_RS02075 0.10 -0.4 475,773 + BPHYT_RS02075 0.27 +1.0 475,773 + BPHYT_RS02075 0.27 -0.6 475,815 + BPHYT_RS02075 0.30 -0.5 475,944 + BPHYT_RS02075 0.42 -1.3 475,944 + BPHYT_RS02075 0.42 -0.4 475,944 + BPHYT_RS02075 0.42 -0.8 475,944 + BPHYT_RS02075 0.42 +0.4 475,944 + BPHYT_RS02075 0.42 -0.2 475,944 + +0.5 475,971 + BPHYT_RS02075 0.45 -1.1 475,971 + BPHYT_RS02075 0.45 -0.1 476,068 - BPHYT_RS02075 0.54 -0.7 476,068 - BPHYT_RS02075 0.54 -0.2 476,068 - BPHYT_RS02075 0.54 +0.2 476,068 - BPHYT_RS02075 0.54 -0.7 476,125 - BPHYT_RS02075 0.59 +0.1 476,125 - BPHYT_RS02075 0.59 -0.2 476,157 + BPHYT_RS02075 0.62 -0.6 476,158 - BPHYT_RS02075 0.62 +0.7 476,158 - BPHYT_RS02075 0.62 -0.1 476,158 - BPHYT_RS02075 0.62 +1.4 476,163 + BPHYT_RS02075 0.62 +0.3 476,164 - BPHYT_RS02075 0.63 +0.2 476,164 - BPHYT_RS02075 0.63 -0.4 476,263 - BPHYT_RS02075 0.72 +1.6 476,295 + BPHYT_RS02075 0.75 -0.2 476,295 + BPHYT_RS02075 0.75 +0.9 476,301 + BPHYT_RS02075 0.75 -0.6 476,301 + BPHYT_RS02075 0.75 -1.0 476,301 + BPHYT_RS02075 0.75 +0.5 476,301 + BPHYT_RS02075 0.75 -0.3 476,301 + BPHYT_RS02075 0.75 -0.1 476,301 + +0.1 476,302 - BPHYT_RS02075 0.75 -0.4 476,302 - BPHYT_RS02075 0.75 -0.4 476,307 + BPHYT_RS02075 0.76 -0.3 476,308 - BPHYT_RS02075 0.76 -0.3 476,308 - BPHYT_RS02075 0.76 -0.2 476,308 - BPHYT_RS02075 0.76 +0.2 476,308 - BPHYT_RS02075 0.76 +0.3 476,458 - BPHYT_RS02075 0.90 -0.3 476,491 - -0.3 476,491 - -0.2 476,499 + -1.3 476,499 + -0.3 476,500 - -1.9 476,500 - -1.7 476,505 + +0.1 476,505 + +1.4 476,505 + +1.9 476,505 + +0.3 476,505 + -0.0 476,505 + -0.6 476,505 + +0.3 476,506 - +0.0 476,506 - +1.3 476,506 - +0.1 476,506 - -0.5 476,506 - +0.1 476,541 + +0.4 476,615 + -0.2 476,729 - +0.5 476,782 - -0.5 476,972 - BPHYT_RS02080 0.21 -0.1 477,149 + BPHYT_RS02080 0.40 -0.9 477,149 + BPHYT_RS02080 0.40 +0.3 477,150 - BPHYT_RS02080 0.40 +0.3 477,346 + BPHYT_RS02080 0.61 -1.2 477,346 + BPHYT_RS02080 0.61 -0.1 477,347 - BPHYT_RS02080 0.61 -1.0 477,347 - BPHYT_RS02080 0.61 -1.3
Or see this region's nucleotide sequence