Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32310

Experiment: 36hr Phyto Lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS32300 and BPHYT_RS32305 are separated by 202 nucleotidesBPHYT_RS32305 and BPHYT_RS32310 are separated by 154 nucleotidesBPHYT_RS32310 and BPHYT_RS32315 are separated by 181 nucleotides BPHYT_RS32300: BPHYT_RS32300 - integrase, at 2,816,092 to 2,817,609 _RS32300 BPHYT_RS32305: BPHYT_RS32305 - hypothetical protein, at 2,817,812 to 2,818,234 _RS32305 BPHYT_RS32310: BPHYT_RS32310 - porin, at 2,818,389 to 2,819,576 _RS32310 BPHYT_RS32315: BPHYT_RS32315 - FAD-dependent oxidoreductase, at 2,819,758 to 2,820,882 _RS32315 Position (kb) 2818 2819 2820Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2817.813 kb on + strandat 2817.848 kb on + strandat 2817.860 kb on + strand, within BPHYT_RS32305at 2817.948 kb on + strand, within BPHYT_RS32305at 2818.328 kb on - strandat 2818.328 kb on - strandat 2818.775 kb on - strand, within BPHYT_RS32310at 2818.834 kb on + strand, within BPHYT_RS32310at 2818.969 kb on - strand, within BPHYT_RS32310at 2819.426 kb on - strand, within BPHYT_RS32310at 2819.621 kb on + strandat 2820.155 kb on + strand, within BPHYT_RS32315

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr Phyto Lib only
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2,817,813 + -0.9
2,817,848 + -0.2
2,817,860 + BPHYT_RS32305 0.11 +0.5
2,817,948 + BPHYT_RS32305 0.32 +1.7
2,818,328 - -0.3
2,818,328 - -1.0
2,818,775 - BPHYT_RS32310 0.32 -2.1
2,818,834 + BPHYT_RS32310 0.37 +0.3
2,818,969 - BPHYT_RS32310 0.49 -1.0
2,819,426 - BPHYT_RS32310 0.87 -0.0
2,819,621 + +3.3
2,820,155 + BPHYT_RS32315 0.35 +0.9

Or see this region's nucleotide sequence