Experiment: 36hr Phyto Lib only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26585 and BPHYT_RS26590 are separated by 92 nucleotides BPHYT_RS26590 and BPHYT_RS26595 are separated by 94 nucleotides BPHYT_RS26595 and BPHYT_RS26600 are separated by 118 nucleotides
BPHYT_RS26585: BPHYT_RS26585 - trehalase, at 1,532,993 to 1,534,666
_RS26585
BPHYT_RS26590: BPHYT_RS26590 - DNA-3-methyladenine glycosylase, at 1,534,759 to 1,535,379
_RS26590
BPHYT_RS26595: BPHYT_RS26595 - carbonic anhydrase, at 1,535,474 to 1,536,211
_RS26595
BPHYT_RS26600: BPHYT_RS26600 - carbonic anhydrase, at 1,536,330 to 1,536,965
_RS26600
Position (kb) 1534
1535
1536 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1533.774 kb on - strand, within BPHYT_RS26585 at 1533.954 kb on - strand, within BPHYT_RS26585 at 1534.187 kb on + strand, within BPHYT_RS26585 at 1534.208 kb on + strand, within BPHYT_RS26585 at 1534.374 kb on - strand, within BPHYT_RS26585 at 1534.514 kb on + strand at 1534.514 kb on + strand at 1534.938 kb on + strand, within BPHYT_RS26590 at 1534.957 kb on + strand, within BPHYT_RS26590 at 1534.957 kb on + strand, within BPHYT_RS26590 at 1534.958 kb on - strand, within BPHYT_RS26590 at 1535.091 kb on + strand, within BPHYT_RS26590 at 1535.092 kb on - strand, within BPHYT_RS26590 at 1535.285 kb on - strand, within BPHYT_RS26590 at 1535.285 kb on - strand, within BPHYT_RS26590 at 1535.508 kb on + strand at 1535.547 kb on + strand at 1535.824 kb on - strand, within BPHYT_RS26595 at 1535.997 kb on + strand, within BPHYT_RS26595 at 1536.017 kb on - strand, within BPHYT_RS26595 at 1536.224 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr Phyto Lib only remove 1,533,774 - BPHYT_RS26585 0.47 -0.8 1,533,954 - BPHYT_RS26585 0.57 +1.2 1,534,187 + BPHYT_RS26585 0.71 -0.9 1,534,208 + BPHYT_RS26585 0.73 -1.5 1,534,374 - BPHYT_RS26585 0.82 -0.0 1,534,514 + +0.3 1,534,514 + +0.7 1,534,938 + BPHYT_RS26590 0.29 -0.4 1,534,957 + BPHYT_RS26590 0.32 -1.9 1,534,957 + BPHYT_RS26590 0.32 +2.2 1,534,958 - BPHYT_RS26590 0.32 -1.7 1,535,091 + BPHYT_RS26590 0.53 -0.0 1,535,092 - BPHYT_RS26590 0.54 +0.5 1,535,285 - BPHYT_RS26590 0.85 +1.3 1,535,285 - BPHYT_RS26590 0.85 +0.2 1,535,508 + -0.4 1,535,547 + -0.3 1,535,824 - BPHYT_RS26595 0.47 -0.5 1,535,997 + BPHYT_RS26595 0.71 -1.1 1,536,017 - BPHYT_RS26595 0.74 +0.3 1,536,224 - +0.5
Or see this region's nucleotide sequence