Experiment: 36hr Phyto Lib only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23710 and BPHYT_RS23715 are separated by 443 nucleotides BPHYT_RS23715 and BPHYT_RS23720 are separated by 91 nucleotides BPHYT_RS23720 and BPHYT_RS23725 are separated by 329 nucleotides
BPHYT_RS23710: BPHYT_RS23710 - hypothetical protein, at 887,696 to 888,046
_RS23710
BPHYT_RS23715: BPHYT_RS23715 - hypothetical protein, at 888,490 to 888,756
_RS23715
BPHYT_RS23720: BPHYT_RS23720 - nH(3)-dependent NAD(+) synthetase, at 888,848 to 889,708
_RS23720
BPHYT_RS23725: BPHYT_RS23725 - hypothetical protein, at 890,038 to 891,024
_RS23725
Position (kb) 888
889
890 Strain fitness (log2 ratio) -1
0
1
2 at 888.202 kb on + strand at 888.211 kb on - strand at 888.324 kb on - strand at 888.324 kb on - strand at 889.005 kb on + strand, within BPHYT_RS23720 at 889.071 kb on - strand, within BPHYT_RS23720 at 889.143 kb on - strand, within BPHYT_RS23720 at 889.143 kb on - strand, within BPHYT_RS23720 at 889.143 kb on - strand, within BPHYT_RS23720 at 889.246 kb on - strand, within BPHYT_RS23720 at 889.276 kb on + strand, within BPHYT_RS23720 at 889.314 kb on + strand, within BPHYT_RS23720 at 889.314 kb on + strand, within BPHYT_RS23720 at 889.566 kb on + strand, within BPHYT_RS23720 at 889.567 kb on - strand, within BPHYT_RS23720 at 889.567 kb on - strand, within BPHYT_RS23720 at 889.594 kb on - strand, within BPHYT_RS23720 at 889.804 kb on - strand at 889.823 kb on + strand at 889.824 kb on - strand at 889.878 kb on + strand at 889.882 kb on - strand at 889.927 kb on + strand at 889.985 kb on + strand at 889.986 kb on - strand at 890.038 kb on - strand at 890.342 kb on - strand, within BPHYT_RS23725 at 890.402 kb on - strand, within BPHYT_RS23725 at 890.449 kb on + strand, within BPHYT_RS23725 at 890.524 kb on + strand, within BPHYT_RS23725 at 890.524 kb on + strand, within BPHYT_RS23725
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr Phyto Lib only remove 888,202 + +0.2 888,211 - -0.2 888,324 - -0.0 888,324 - -0.7 889,005 + BPHYT_RS23720 0.18 -0.4 889,071 - BPHYT_RS23720 0.26 -1.1 889,143 - BPHYT_RS23720 0.34 +1.0 889,143 - BPHYT_RS23720 0.34 +0.2 889,143 - BPHYT_RS23720 0.34 +0.3 889,246 - BPHYT_RS23720 0.46 -0.0 889,276 + BPHYT_RS23720 0.50 +0.3 889,314 + BPHYT_RS23720 0.54 +0.1 889,314 + BPHYT_RS23720 0.54 -1.2 889,566 + BPHYT_RS23720 0.83 +0.0 889,567 - BPHYT_RS23720 0.84 +0.9 889,567 - BPHYT_RS23720 0.84 -1.3 889,594 - BPHYT_RS23720 0.87 +1.3 889,804 - -0.3 889,823 + +1.6 889,824 - -0.2 889,878 + -0.9 889,882 - -0.9 889,927 + +0.9 889,985 + -0.4 889,986 - -0.8 890,038 - -0.0 890,342 - BPHYT_RS23725 0.31 -0.7 890,402 - BPHYT_RS23725 0.37 -0.1 890,449 + BPHYT_RS23725 0.42 +2.3 890,524 + BPHYT_RS23725 0.49 -0.9 890,524 + BPHYT_RS23725 0.49 -1.2
Or see this region's nucleotide sequence