Experiment: 36hr Phyto Lib only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21350 and BPHYT_RS21355 are separated by 225 nucleotides BPHYT_RS21355 and BPHYT_RS21360 are separated by 221 nucleotides
BPHYT_RS21350: BPHYT_RS21350 - ADP-glucose pyrophosphorylase, at 348,294 to 349,058
_RS21350
BPHYT_RS21355: BPHYT_RS21355 - major facilitator transporter, at 349,284 to 350,687
_RS21355
BPHYT_RS21360: BPHYT_RS21360 - gamma-glutamyltranspeptidase, at 350,909 to 352,642
_RS21360
Position (kb) 349
350
351 Strain fitness (log2 ratio) -2
-1
0
1
2 at 348.865 kb on - strand, within BPHYT_RS21350 at 348.929 kb on + strand, within BPHYT_RS21350 at 349.238 kb on + strand at 349.440 kb on + strand, within BPHYT_RS21355 at 349.440 kb on + strand, within BPHYT_RS21355 at 349.441 kb on - strand, within BPHYT_RS21355 at 349.441 kb on - strand, within BPHYT_RS21355 at 349.441 kb on - strand, within BPHYT_RS21355 at 349.441 kb on - strand, within BPHYT_RS21355 at 349.693 kb on - strand, within BPHYT_RS21355 at 349.714 kb on + strand, within BPHYT_RS21355 at 349.715 kb on - strand, within BPHYT_RS21355 at 349.758 kb on + strand, within BPHYT_RS21355 at 349.758 kb on + strand, within BPHYT_RS21355 at 349.758 kb on + strand, within BPHYT_RS21355 at 349.758 kb on + strand, within BPHYT_RS21355 at 349.759 kb on - strand, within BPHYT_RS21355 at 349.759 kb on - strand, within BPHYT_RS21355 at 349.759 kb on - strand, within BPHYT_RS21355 at 349.759 kb on - strand, within BPHYT_RS21355 at 349.759 kb on - strand at 349.759 kb on - strand, within BPHYT_RS21355 at 349.988 kb on - strand, within BPHYT_RS21355 at 350.013 kb on + strand, within BPHYT_RS21355 at 350.189 kb on + strand, within BPHYT_RS21355 at 350.190 kb on - strand, within BPHYT_RS21355 at 350.313 kb on + strand, within BPHYT_RS21355 at 350.685 kb on + strand at 350.813 kb on + strand at 350.818 kb on + strand at 350.818 kb on + strand at 350.819 kb on - strand at 350.819 kb on - strand at 350.819 kb on - strand at 350.819 kb on - strand at 350.820 kb on + strand at 350.820 kb on + strand at 350.821 kb on - strand at 350.821 kb on - strand at 350.853 kb on + strand at 350.854 kb on - strand at 350.873 kb on + strand at 350.873 kb on + strand at 350.929 kb on + strand at 351.209 kb on + strand, within BPHYT_RS21360 at 351.209 kb on + strand, within BPHYT_RS21360 at 351.209 kb on + strand, within BPHYT_RS21360 at 351.210 kb on - strand, within BPHYT_RS21360 at 351.210 kb on - strand, within BPHYT_RS21360 at 351.210 kb on - strand, within BPHYT_RS21360 at 351.278 kb on + strand, within BPHYT_RS21360 at 351.278 kb on + strand, within BPHYT_RS21360 at 351.278 kb on + strand, within BPHYT_RS21360 at 351.278 kb on + strand, within BPHYT_RS21360 at 351.279 kb on - strand, within BPHYT_RS21360 at 351.394 kb on + strand, within BPHYT_RS21360 at 351.395 kb on - strand, within BPHYT_RS21360 at 351.518 kb on - strand, within BPHYT_RS21360 at 351.521 kb on + strand, within BPHYT_RS21360 at 351.521 kb on + strand, within BPHYT_RS21360 at 351.615 kb on - strand, within BPHYT_RS21360
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr Phyto Lib only remove 348,865 - BPHYT_RS21350 0.75 +1.1 348,929 + BPHYT_RS21350 0.83 -2.3 349,238 + +0.1 349,440 + BPHYT_RS21355 0.11 -1.1 349,440 + BPHYT_RS21355 0.11 +0.8 349,441 - BPHYT_RS21355 0.11 +1.7 349,441 - BPHYT_RS21355 0.11 +1.3 349,441 - BPHYT_RS21355 0.11 +0.6 349,441 - BPHYT_RS21355 0.11 +0.7 349,693 - BPHYT_RS21355 0.29 -0.2 349,714 + BPHYT_RS21355 0.31 -1.2 349,715 - BPHYT_RS21355 0.31 -0.6 349,758 + BPHYT_RS21355 0.34 +0.0 349,758 + BPHYT_RS21355 0.34 +0.2 349,758 + BPHYT_RS21355 0.34 -0.0 349,758 + BPHYT_RS21355 0.34 +0.2 349,759 - BPHYT_RS21355 0.34 +0.9 349,759 - BPHYT_RS21355 0.34 -1.2 349,759 - BPHYT_RS21355 0.34 -1.0 349,759 - BPHYT_RS21355 0.34 -0.4 349,759 - -0.1 349,759 - BPHYT_RS21355 0.34 +0.4 349,988 - BPHYT_RS21355 0.50 -0.7 350,013 + BPHYT_RS21355 0.52 -0.1 350,189 + BPHYT_RS21355 0.64 -1.8 350,190 - BPHYT_RS21355 0.65 +0.3 350,313 + BPHYT_RS21355 0.73 -1.0 350,685 + -0.8 350,813 + -1.3 350,818 + +2.7 350,818 + -0.3 350,819 - -0.0 350,819 - +1.0 350,819 - +0.2 350,819 - +0.4 350,820 + +0.6 350,820 + -0.8 350,821 - -0.7 350,821 - -1.3 350,853 + +0.1 350,854 - -0.6 350,873 + -1.0 350,873 + -0.7 350,929 + +1.1 351,209 + BPHYT_RS21360 0.17 -0.0 351,209 + BPHYT_RS21360 0.17 -0.5 351,209 + BPHYT_RS21360 0.17 -0.4 351,210 - BPHYT_RS21360 0.17 +0.2 351,210 - BPHYT_RS21360 0.17 +0.2 351,210 - BPHYT_RS21360 0.17 -0.5 351,278 + BPHYT_RS21360 0.21 +2.3 351,278 + BPHYT_RS21360 0.21 -1.0 351,278 + BPHYT_RS21360 0.21 -0.8 351,278 + BPHYT_RS21360 0.21 -0.1 351,279 - BPHYT_RS21360 0.21 +0.2 351,394 + BPHYT_RS21360 0.28 +0.3 351,395 - BPHYT_RS21360 0.28 +2.1 351,518 - BPHYT_RS21360 0.35 +0.7 351,521 + BPHYT_RS21360 0.35 +0.2 351,521 + BPHYT_RS21360 0.35 -0.2 351,615 - BPHYT_RS21360 0.41 -0.2
Or see this region's nucleotide sequence