Experiment: 36hr Phyto Lib only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20450 and BPHYT_RS20455 are separated by 108 nucleotides BPHYT_RS20455 and BPHYT_RS20460 are separated by 227 nucleotides
BPHYT_RS20450: BPHYT_RS20450 - 6-chlorohydroxyquinol-1,2-dioxygenase, at 150,684 to 151,547
_RS20450
BPHYT_RS20455: BPHYT_RS20455 - hypothetical protein, at 151,656 to 152,333
_RS20455
BPHYT_RS20460: BPHYT_RS20460 - NmrA family transcriptional regulator, at 152,561 to 153,442
_RS20460
Position (kb) 151
152
153 Strain fitness (log2 ratio) -2
-1
0
1
2 at 150.874 kb on + strand, within BPHYT_RS20450 at 150.944 kb on + strand, within BPHYT_RS20450 at 151.078 kb on + strand, within BPHYT_RS20450 at 151.079 kb on - strand, within BPHYT_RS20450 at 151.079 kb on - strand, within BPHYT_RS20450 at 151.664 kb on + strand at 151.878 kb on - strand, within BPHYT_RS20455 at 152.018 kb on - strand, within BPHYT_RS20455 at 152.018 kb on - strand, within BPHYT_RS20455 at 152.058 kb on - strand, within BPHYT_RS20455 at 152.142 kb on - strand, within BPHYT_RS20455 at 152.153 kb on + strand, within BPHYT_RS20455 at 152.167 kb on + strand, within BPHYT_RS20455 at 152.423 kb on + strand at 152.475 kb on + strand at 152.517 kb on - strand at 152.554 kb on + strand at 152.757 kb on - strand, within BPHYT_RS20460 at 152.757 kb on - strand, within BPHYT_RS20460 at 152.859 kb on + strand, within BPHYT_RS20460 at 152.859 kb on + strand, within BPHYT_RS20460 at 152.859 kb on + strand, within BPHYT_RS20460 at 152.860 kb on - strand, within BPHYT_RS20460 at 152.975 kb on - strand, within BPHYT_RS20460 at 152.980 kb on - strand, within BPHYT_RS20460 at 153.033 kb on + strand, within BPHYT_RS20460 at 153.034 kb on - strand, within BPHYT_RS20460 at 153.150 kb on + strand, within BPHYT_RS20460 at 153.150 kb on + strand, within BPHYT_RS20460
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr Phyto Lib only remove 150,874 + BPHYT_RS20450 0.22 +0.0 150,944 + BPHYT_RS20450 0.30 -1.2 151,078 + BPHYT_RS20450 0.46 +2.1 151,079 - BPHYT_RS20450 0.46 +0.6 151,079 - BPHYT_RS20450 0.46 -0.9 151,664 + +0.7 151,878 - BPHYT_RS20455 0.33 -1.4 152,018 - BPHYT_RS20455 0.53 -1.0 152,018 - BPHYT_RS20455 0.53 -0.8 152,058 - BPHYT_RS20455 0.59 +0.9 152,142 - BPHYT_RS20455 0.72 +1.2 152,153 + BPHYT_RS20455 0.73 +0.1 152,167 + BPHYT_RS20455 0.75 -0.6 152,423 + +1.3 152,475 + +0.8 152,517 - +0.6 152,554 + -0.1 152,757 - BPHYT_RS20460 0.22 +0.7 152,757 - BPHYT_RS20460 0.22 -0.3 152,859 + BPHYT_RS20460 0.34 +0.2 152,859 + BPHYT_RS20460 0.34 +0.7 152,859 + BPHYT_RS20460 0.34 -0.5 152,860 - BPHYT_RS20460 0.34 -0.4 152,975 - BPHYT_RS20460 0.47 -0.6 152,980 - BPHYT_RS20460 0.48 -0.7 153,033 + BPHYT_RS20460 0.54 -1.3 153,034 - BPHYT_RS20460 0.54 +0.3 153,150 + BPHYT_RS20460 0.67 -2.5 153,150 + BPHYT_RS20460 0.67 +0.4
Or see this region's nucleotide sequence