Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11710

Experiment: 36hr Phyto Lib only

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS11705 and BPHYT_RS11710 are separated by 230 nucleotidesBPHYT_RS11710 and BPHYT_RS11715 are separated by 870 nucleotides BPHYT_RS11705: BPHYT_RS11705 - hypothetical protein, at 2,653,802 to 2,654,521 _RS11705 BPHYT_RS11710: BPHYT_RS11710 - diguanylate cyclase, at 2,654,752 to 2,656,233 _RS11710 BPHYT_RS11715: BPHYT_RS11715 - allantoin permease, at 2,657,104 to 2,658,531 _RS11715 Position (kb) 2654 2655 2656 2657Strain fitness (log2 ratio) -1 0 1 2 3 4at 2653.770 kb on - strandat 2654.350 kb on + strand, within BPHYT_RS11705at 2654.351 kb on - strand, within BPHYT_RS11705at 2655.002 kb on - strand, within BPHYT_RS11710at 2655.058 kb on - strandat 2655.114 kb on - strand, within BPHYT_RS11710at 2655.386 kb on + strand, within BPHYT_RS11710at 2655.438 kb on - strand, within BPHYT_RS11710at 2655.438 kb on - strand, within BPHYT_RS11710at 2655.874 kb on - strand, within BPHYT_RS11710at 2656.126 kb on + strandat 2656.142 kb on - strandat 2656.217 kb on + strandat 2656.539 kb on + strandat 2656.577 kb on + strandat 2657.066 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr Phyto Lib only
remove
2,653,770 - -0.4
2,654,350 + BPHYT_RS11705 0.76 +0.1
2,654,351 - BPHYT_RS11705 0.76 +4.2
2,655,002 - BPHYT_RS11710 0.17 -1.0
2,655,058 - +1.4
2,655,114 - BPHYT_RS11710 0.24 +2.4
2,655,386 + BPHYT_RS11710 0.43 -0.7
2,655,438 - BPHYT_RS11710 0.46 -1.4
2,655,438 - BPHYT_RS11710 0.46 -0.1
2,655,874 - BPHYT_RS11710 0.76 +0.1
2,656,126 + +0.1
2,656,142 - +0.4
2,656,217 + +1.1
2,656,539 + -0.2
2,656,577 + -0.9
2,657,066 - +0.3

Or see this region's nucleotide sequence