Experiment: 36hr Phyto Lib only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03930 and BPHYT_RS03935 overlap by 4 nucleotides BPHYT_RS03935 and BPHYT_RS03940 are separated by 73 nucleotides
BPHYT_RS03930: BPHYT_RS03930 - 3-hydroxy-3-methylglutaryl-CoA lyase, at 888,569 to 889,546
_RS03930
BPHYT_RS03935: BPHYT_RS03935 - CoA transferase, at 889,543 to 890,781
_RS03935
BPHYT_RS03940: BPHYT_RS03940 - MFS transporter, at 890,855 to 892,339
_RS03940
Position (kb) 889
890
891 Strain fitness (log2 ratio) -1
0
1
2 at 888.561 kb on - strand at 888.786 kb on - strand, within BPHYT_RS03930 at 888.896 kb on - strand, within BPHYT_RS03930 at 888.970 kb on + strand, within BPHYT_RS03930 at 889.464 kb on - strand at 889.536 kb on + strand at 889.537 kb on - strand at 889.636 kb on - strand at 889.936 kb on + strand, within BPHYT_RS03935 at 889.936 kb on + strand, within BPHYT_RS03935 at 889.937 kb on - strand at 889.969 kb on + strand, within BPHYT_RS03935 at 890.024 kb on - strand, within BPHYT_RS03935 at 890.024 kb on - strand, within BPHYT_RS03935 at 890.025 kb on + strand, within BPHYT_RS03935 at 890.025 kb on + strand, within BPHYT_RS03935 at 890.026 kb on - strand, within BPHYT_RS03935 at 890.395 kb on - strand, within BPHYT_RS03935 at 890.880 kb on - strand at 890.919 kb on + strand at 891.389 kb on + strand, within BPHYT_RS03940 at 891.389 kb on + strand, within BPHYT_RS03940 at 891.390 kb on - strand, within BPHYT_RS03940 at 891.390 kb on - strand, within BPHYT_RS03940 at 891.488 kb on + strand, within BPHYT_RS03940 at 891.510 kb on - strand, within BPHYT_RS03940
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr Phyto Lib only remove 888,561 - -0.8 888,786 - BPHYT_RS03930 0.22 -0.2 888,896 - BPHYT_RS03930 0.33 -1.6 888,970 + BPHYT_RS03930 0.41 -0.0 889,464 - -0.0 889,536 + -0.9 889,537 - -0.1 889,636 - +2.2 889,936 + BPHYT_RS03935 0.32 -0.6 889,936 + BPHYT_RS03935 0.32 -0.7 889,937 - -0.0 889,969 + BPHYT_RS03935 0.34 +0.6 890,024 - BPHYT_RS03935 0.39 +0.1 890,024 - BPHYT_RS03935 0.39 -0.1 890,025 + BPHYT_RS03935 0.39 -0.4 890,025 + BPHYT_RS03935 0.39 -0.0 890,026 - BPHYT_RS03935 0.39 +0.2 890,395 - BPHYT_RS03935 0.69 +0.7 890,880 - -0.2 890,919 + -0.4 891,389 + BPHYT_RS03940 0.36 -0.2 891,389 + BPHYT_RS03940 0.36 +0.1 891,390 - BPHYT_RS03940 0.36 -0.7 891,390 - BPHYT_RS03940 0.36 -1.1 891,488 + BPHYT_RS03940 0.43 +1.0 891,510 - BPHYT_RS03940 0.44 -0.0
Or see this region's nucleotide sequence