Experiment: 36hr Phyto Lib only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01170 and BPHYT_RS01180 are separated by 426 nucleotides BPHYT_RS01180 and BPHYT_RS01185 are separated by 105 nucleotides
BPHYT_RS01170: BPHYT_RS01170 - hypothetical protein, at 270,415 to 270,657
_RS01170
BPHYT_RS01180: BPHYT_RS01180 - AraC family transcriptional regulator, at 271,084 to 271,878
_RS01180
BPHYT_RS01185: BPHYT_RS01185 - sodium:sulfate symporter, at 271,984 to 273,444
_RS01185
Position (kb) 271
272 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 270.151 kb on + strand at 270.151 kb on + strand at 270.152 kb on - strand at 270.223 kb on - strand at 270.223 kb on - strand at 270.368 kb on + strand at 270.368 kb on + strand at 270.368 kb on + strand at 270.541 kb on + strand, within BPHYT_RS01170 at 270.542 kb on - strand, within BPHYT_RS01170 at 270.544 kb on - strand, within BPHYT_RS01170 at 270.544 kb on - strand, within BPHYT_RS01170 at 270.835 kb on + strand at 270.836 kb on - strand at 270.922 kb on + strand at 270.922 kb on + strand at 270.922 kb on + strand at 270.922 kb on + strand at 270.922 kb on + strand at 270.922 kb on + strand at 270.922 kb on + strand at 270.923 kb on - strand at 270.923 kb on - strand at 270.924 kb on + strand at 270.924 kb on + strand at 270.925 kb on - strand at 270.925 kb on - strand at 270.925 kb on - strand at 270.925 kb on - strand at 270.925 kb on - strand at 271.001 kb on - strand at 271.059 kb on - strand at 271.607 kb on + strand, within BPHYT_RS01180 at 271.607 kb on + strand, within BPHYT_RS01180 at 271.761 kb on + strand, within BPHYT_RS01180 at 271.931 kb on + strand at 271.932 kb on - strand at 272.128 kb on + strand at 272.129 kb on - strand at 272.129 kb on - strand at 272.419 kb on + strand, within BPHYT_RS01185 at 272.420 kb on - strand, within BPHYT_RS01185 at 272.420 kb on - strand, within BPHYT_RS01185 at 272.599 kb on + strand, within BPHYT_RS01185 at 272.599 kb on + strand, within BPHYT_RS01185 at 272.599 kb on + strand, within BPHYT_RS01185 at 272.599 kb on + strand at 272.599 kb on + strand, within BPHYT_RS01185 at 272.600 kb on - strand, within BPHYT_RS01185 at 272.600 kb on - strand, within BPHYT_RS01185 at 272.600 kb on - strand, within BPHYT_RS01185 at 272.600 kb on - strand, within BPHYT_RS01185 at 272.601 kb on + strand, within BPHYT_RS01185 at 272.671 kb on + strand, within BPHYT_RS01185 at 272.689 kb on + strand, within BPHYT_RS01185 at 272.698 kb on + strand, within BPHYT_RS01185 at 272.698 kb on + strand, within BPHYT_RS01185 at 272.699 kb on - strand, within BPHYT_RS01185
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr Phyto Lib only remove 270,151 + -0.2 270,151 + +0.8 270,152 - -0.5 270,223 - -0.1 270,223 - -1.4 270,368 + +0.6 270,368 + -0.5 270,368 + -0.4 270,541 + BPHYT_RS01170 0.52 +0.3 270,542 - BPHYT_RS01170 0.52 +2.6 270,544 - BPHYT_RS01170 0.53 -0.3 270,544 - BPHYT_RS01170 0.53 -2.6 270,835 + +1.0 270,836 - -0.2 270,922 + -2.3 270,922 + -0.0 270,922 + -0.4 270,922 + +0.3 270,922 + +0.3 270,922 + +0.1 270,922 + -0.1 270,923 - -0.9 270,923 - -0.7 270,924 + -0.3 270,924 + -0.5 270,925 - -0.2 270,925 - +2.6 270,925 - -0.9 270,925 - +3.1 270,925 - -0.2 271,001 - -1.4 271,059 - +0.3 271,607 + BPHYT_RS01180 0.66 -1.8 271,607 + BPHYT_RS01180 0.66 -0.9 271,761 + BPHYT_RS01180 0.85 +0.8 271,931 + +1.6 271,932 - -0.5 272,128 + -0.5 272,129 - -0.1 272,129 - -0.4 272,419 + BPHYT_RS01185 0.30 -0.5 272,420 - BPHYT_RS01185 0.30 -0.3 272,420 - BPHYT_RS01185 0.30 +1.6 272,599 + BPHYT_RS01185 0.42 +0.6 272,599 + BPHYT_RS01185 0.42 -1.5 272,599 + BPHYT_RS01185 0.42 +0.3 272,599 + +1.0 272,599 + BPHYT_RS01185 0.42 -0.3 272,600 - BPHYT_RS01185 0.42 -0.2 272,600 - BPHYT_RS01185 0.42 -0.1 272,600 - BPHYT_RS01185 0.42 +0.0 272,600 - BPHYT_RS01185 0.42 -0.5 272,601 + BPHYT_RS01185 0.42 +1.1 272,671 + BPHYT_RS01185 0.47 -2.2 272,689 + BPHYT_RS01185 0.48 +1.3 272,698 + BPHYT_RS01185 0.49 -3.2 272,698 + BPHYT_RS01185 0.49 +0.1 272,699 - BPHYT_RS01185 0.49 -0.3
Or see this region's nucleotide sequence