Experiment: 36hr PHYTO11 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02765 and BPHYT_RS02770 overlap by 11 nucleotides BPHYT_RS02770 and BPHYT_RS02775 are separated by 338 nucleotides BPHYT_RS02775 and BPHYT_RS02780 are separated by 363 nucleotides BPHYT_RS02780 and BPHYT_RS02785 are separated by 42 nucleotides
BPHYT_RS02765: BPHYT_RS02765 - cytochrome BD oxidase subunit I, at 621,058 to 622,650
_RS02765
BPHYT_RS02770: BPHYT_RS02770 - membrane protein, at 622,640 to 622,900
_RS02770
BPHYT_RS02775: BPHYT_RS02775 - RNA polymerase sigma 70, at 623,239 to 624,174
_RS02775
BPHYT_RS02780: BPHYT_RS02780 - deacylase, at 624,538 to 625,101
_RS02780
BPHYT_RS02785: BPHYT_RS02785 - hypothetical protein, at 625,144 to 625,527
_RS02785
Position (kb) 623
624
625 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 622.397 kb on + strand, within BPHYT_RS02765 at 622.526 kb on + strand at 622.526 kb on + strand at 622.526 kb on + strand at 622.527 kb on - strand at 622.726 kb on + strand, within BPHYT_RS02770 at 622.727 kb on - strand, within BPHYT_RS02770 at 622.727 kb on - strand, within BPHYT_RS02770 at 622.727 kb on - strand, within BPHYT_RS02770 at 622.778 kb on + strand, within BPHYT_RS02770 at 622.892 kb on + strand at 623.054 kb on + strand at 623.055 kb on - strand at 623.055 kb on - strand at 624.051 kb on - strand, within BPHYT_RS02775 at 624.177 kb on - strand at 624.267 kb on + strand at 624.267 kb on + strand at 624.268 kb on - strand at 624.287 kb on + strand at 624.288 kb on - strand at 624.288 kb on - strand at 624.363 kb on + strand at 624.371 kb on - strand at 624.396 kb on + strand at 624.396 kb on + strand at 624.396 kb on + strand at 624.396 kb on + strand at 624.397 kb on - strand at 624.429 kb on + strand at 624.456 kb on - strand at 624.456 kb on - strand at 624.482 kb on + strand at 624.482 kb on + strand at 624.483 kb on - strand at 624.500 kb on + strand at 624.536 kb on - strand at 624.555 kb on + strand at 625.001 kb on - strand, within BPHYT_RS02780 at 625.065 kb on - strand at 625.079 kb on + strand at 625.079 kb on + strand at 625.079 kb on + strand at 625.079 kb on + strand at 625.079 kb on + strand at 625.080 kb on - strand at 625.081 kb on + strand at 625.081 kb on + strand at 625.091 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 0.1 remove 622,397 + BPHYT_RS02765 0.84 -0.6 622,526 + -2.6 622,526 + -0.1 622,526 + +2.4 622,527 - +2.4 622,726 + BPHYT_RS02770 0.33 +1.6 622,727 - BPHYT_RS02770 0.33 +0.0 622,727 - BPHYT_RS02770 0.33 -1.4 622,727 - BPHYT_RS02770 0.33 +0.4 622,778 + BPHYT_RS02770 0.53 -0.6 622,892 + +0.4 623,054 + +0.1 623,055 - -2.2 623,055 - -0.3 624,051 - BPHYT_RS02775 0.87 +1.4 624,177 - +0.6 624,267 + +0.1 624,267 + +0.8 624,268 - +0.4 624,287 + -1.0 624,288 - -0.6 624,288 - +0.1 624,363 + -0.5 624,371 - -0.9 624,396 + +3.4 624,396 + -0.7 624,396 + +0.4 624,396 + +0.2 624,397 - +0.2 624,429 + +0.7 624,456 - -0.7 624,456 - +0.8 624,482 + -0.5 624,482 + -0.5 624,483 - +0.1 624,500 + -1.6 624,536 - -0.1 624,555 + +1.8 625,001 - BPHYT_RS02780 0.82 +0.9 625,065 - -0.0 625,079 + -1.2 625,079 + +0.3 625,079 + -0.1 625,079 + +1.0 625,079 + -0.6 625,080 - -0.1 625,081 + -0.5 625,081 + +0.1 625,091 - +1.6
Or see this region's nucleotide sequence