Experiment: 36hr PHYTO11 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22690 and BPHYT_RS22695 are separated by 70 nucleotides BPHYT_RS22695 and BPHYT_RS22700 are separated by 94 nucleotides BPHYT_RS22700 and BPHYT_RS22705 are separated by 131 nucleotides BPHYT_RS22705 and BPHYT_RS22710 overlap by 1 nucleotides
BPHYT_RS22690: BPHYT_RS22690 - D-galactonate transporter, at 645,919 to 647,295
_RS22690
BPHYT_RS22695: BPHYT_RS22695 - TetR family transcriptional regulator, at 647,366 to 648,061
_RS22695
BPHYT_RS22700: BPHYT_RS22700 - FAD-dependent oxidoreductase, at 648,156 to 649,436
_RS22700
BPHYT_RS22705: BPHYT_RS22705 - hypothetical protein, at 649,568 to 650,350
_RS22705
BPHYT_RS22710: BPHYT_RS22710 - XRE family transcriptional regulator, at 650,350 to 650,919
_RS22710
Position (kb) 648
649
650 Strain fitness (log2 ratio) -1
0
1 at 647.473 kb on + strand, within BPHYT_RS22695 at 647.474 kb on - strand, within BPHYT_RS22695 at 647.594 kb on - strand, within BPHYT_RS22695 at 647.644 kb on - strand, within BPHYT_RS22695 at 647.717 kb on - strand, within BPHYT_RS22695 at 647.781 kb on - strand, within BPHYT_RS22695 at 647.799 kb on + strand, within BPHYT_RS22695 at 647.800 kb on - strand, within BPHYT_RS22695 at 647.800 kb on - strand, within BPHYT_RS22695 at 647.800 kb on - strand, within BPHYT_RS22695 at 647.800 kb on - strand, within BPHYT_RS22695 at 647.847 kb on + strand, within BPHYT_RS22695 at 647.848 kb on - strand, within BPHYT_RS22695 at 647.853 kb on + strand, within BPHYT_RS22695 at 647.853 kb on + strand, within BPHYT_RS22695 at 647.854 kb on - strand, within BPHYT_RS22695 at 647.980 kb on - strand, within BPHYT_RS22695 at 647.980 kb on - strand, within BPHYT_RS22695 at 648.094 kb on - strand at 648.478 kb on + strand, within BPHYT_RS22700 at 648.479 kb on - strand, within BPHYT_RS22700 at 648.590 kb on - strand, within BPHYT_RS22700 at 648.590 kb on - strand, within BPHYT_RS22700 at 648.590 kb on - strand, within BPHYT_RS22700 at 648.613 kb on + strand, within BPHYT_RS22700 at 648.613 kb on + strand, within BPHYT_RS22700 at 648.679 kb on + strand, within BPHYT_RS22700 at 648.890 kb on - strand, within BPHYT_RS22700 at 649.157 kb on - strand, within BPHYT_RS22700 at 649.215 kb on - strand, within BPHYT_RS22700 at 650.302 kb on - strand at 650.334 kb on + strand at 650.410 kb on - strand, within BPHYT_RS22710
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 0.1 remove 647,473 + BPHYT_RS22695 0.15 +0.3 647,474 - BPHYT_RS22695 0.16 -0.8 647,594 - BPHYT_RS22695 0.33 -0.3 647,644 - BPHYT_RS22695 0.40 +0.2 647,717 - BPHYT_RS22695 0.50 -0.4 647,781 - BPHYT_RS22695 0.60 -0.3 647,799 + BPHYT_RS22695 0.62 -0.5 647,800 - BPHYT_RS22695 0.62 -1.0 647,800 - BPHYT_RS22695 0.62 -0.2 647,800 - BPHYT_RS22695 0.62 +0.8 647,800 - BPHYT_RS22695 0.62 -0.3 647,847 + BPHYT_RS22695 0.69 +0.3 647,848 - BPHYT_RS22695 0.69 +0.9 647,853 + BPHYT_RS22695 0.70 -0.3 647,853 + BPHYT_RS22695 0.70 -0.7 647,854 - BPHYT_RS22695 0.70 -0.8 647,980 - BPHYT_RS22695 0.88 -0.4 647,980 - BPHYT_RS22695 0.88 +0.7 648,094 - -0.1 648,478 + BPHYT_RS22700 0.25 -0.8 648,479 - BPHYT_RS22700 0.25 -0.4 648,590 - BPHYT_RS22700 0.34 +0.7 648,590 - BPHYT_RS22700 0.34 -0.1 648,590 - BPHYT_RS22700 0.34 -1.5 648,613 + BPHYT_RS22700 0.36 +1.3 648,613 + BPHYT_RS22700 0.36 -1.5 648,679 + BPHYT_RS22700 0.41 +0.1 648,890 - BPHYT_RS22700 0.57 +0.4 649,157 - BPHYT_RS22700 0.78 +0.0 649,215 - BPHYT_RS22700 0.83 +0.3 650,302 - +0.7 650,334 + +0.9 650,410 - BPHYT_RS22710 0.11 +0.4
Or see this region's nucleotide sequence