Experiment: 36hr PHYTO11 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04615 and BPHYT_RS04620 are separated by 117 nucleotides BPHYT_RS04620 and BPHYT_RS04625 are separated by 32 nucleotides BPHYT_RS04625 and BPHYT_RS04630 overlap by 4 nucleotides
BPHYT_RS04615: BPHYT_RS04615 - urease accessory protein UreD, at 1,068,876 to 1,069,757
_RS04615
BPHYT_RS04620: BPHYT_RS04620 - urea ABC transporter ATP-binding protein, at 1,069,875 to 1,070,567
_RS04620
BPHYT_RS04625: BPHYT_RS04625 - urea ABC transporter ATP-binding protein, at 1,070,600 to 1,071,466
_RS04625
BPHYT_RS04630: BPHYT_RS04630 - amino acid ABC transporter permease, at 1,071,463 to 1,072,647
_RS04630
Position (kb) 1069
1070
1071 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 1069.120 kb on + strand, within BPHYT_RS04615 at 1069.374 kb on - strand, within BPHYT_RS04615 at 1069.456 kb on + strand, within BPHYT_RS04615 at 1069.520 kb on + strand, within BPHYT_RS04615 at 1069.521 kb on - strand, within BPHYT_RS04615 at 1069.580 kb on + strand, within BPHYT_RS04615 at 1070.094 kb on - strand, within BPHYT_RS04620 at 1070.199 kb on - strand, within BPHYT_RS04620 at 1070.224 kb on + strand, within BPHYT_RS04620 at 1070.225 kb on - strand, within BPHYT_RS04620 at 1070.225 kb on - strand, within BPHYT_RS04620 at 1070.329 kb on + strand, within BPHYT_RS04620 at 1070.330 kb on - strand, within BPHYT_RS04620 at 1070.445 kb on - strand, within BPHYT_RS04620 at 1070.540 kb on - strand at 1070.540 kb on - strand at 1070.562 kb on + strand at 1070.562 kb on + strand at 1070.614 kb on - strand at 1071.163 kb on - strand, within BPHYT_RS04625 at 1071.331 kb on - strand, within BPHYT_RS04625
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 0.1 remove 1,069,120 + BPHYT_RS04615 0.28 -1.1 1,069,374 - BPHYT_RS04615 0.56 +0.0 1,069,456 + BPHYT_RS04615 0.66 +0.0 1,069,520 + BPHYT_RS04615 0.73 +4.4 1,069,521 - BPHYT_RS04615 0.73 -1.5 1,069,580 + BPHYT_RS04615 0.80 +0.1 1,070,094 - BPHYT_RS04620 0.32 +1.4 1,070,199 - BPHYT_RS04620 0.47 -0.8 1,070,224 + BPHYT_RS04620 0.50 +0.8 1,070,225 - BPHYT_RS04620 0.51 +0.5 1,070,225 - BPHYT_RS04620 0.51 -0.0 1,070,329 + BPHYT_RS04620 0.66 -0.2 1,070,330 - BPHYT_RS04620 0.66 +1.1 1,070,445 - BPHYT_RS04620 0.82 -0.6 1,070,540 - +1.6 1,070,540 - -0.4 1,070,562 + +0.1 1,070,562 + +1.4 1,070,614 - +0.0 1,071,163 - BPHYT_RS04625 0.65 -0.2 1,071,331 - BPHYT_RS04625 0.84 +0.1
Or see this region's nucleotide sequence