Experiment: 36hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36330 and BPHYT_RS36335 are separated by 155 nucleotides BPHYT_RS36335 and BPHYT_RS36340 are separated by 629 nucleotides
BPHYT_RS36330: BPHYT_RS36330 - type IV secretory protein VirB8, at 78,670 to 79,569
_RS36330
BPHYT_RS36335: BPHYT_RS36335 - hypothetical protein, at 79,725 to 80,474
_RS36335
BPHYT_RS36340: BPHYT_RS36340 - hypothetical protein, at 81,104 to 81,769
_RS36340
Position (kb) 79
80
81 Strain fitness (log2 ratio) -2
-1
0
1 at 78.761 kb on + strand, within BPHYT_RS36330 at 78.762 kb on - strand, within BPHYT_RS36330 at 78.886 kb on + strand, within BPHYT_RS36330 at 78.887 kb on - strand, within BPHYT_RS36330 at 78.889 kb on + strand, within BPHYT_RS36330 at 78.889 kb on + strand, within BPHYT_RS36330 at 78.889 kb on + strand, within BPHYT_RS36330 at 78.890 kb on - strand, within BPHYT_RS36330 at 78.964 kb on + strand, within BPHYT_RS36330 at 79.012 kb on + strand, within BPHYT_RS36330 at 79.023 kb on - strand, within BPHYT_RS36330 at 79.066 kb on + strand, within BPHYT_RS36330 at 79.066 kb on + strand, within BPHYT_RS36330 at 79.066 kb on + strand, within BPHYT_RS36330 at 79.066 kb on + strand, within BPHYT_RS36330 at 79.067 kb on - strand, within BPHYT_RS36330 at 79.145 kb on - strand, within BPHYT_RS36330 at 79.207 kb on + strand, within BPHYT_RS36330 at 79.208 kb on - strand, within BPHYT_RS36330 at 79.442 kb on + strand, within BPHYT_RS36330 at 79.459 kb on + strand, within BPHYT_RS36330 at 79.459 kb on + strand, within BPHYT_RS36330 at 79.493 kb on - strand at 79.528 kb on - strand at 79.528 kb on - strand at 79.528 kb on - strand at 79.963 kb on - strand, within BPHYT_RS36335 at 79.992 kb on + strand, within BPHYT_RS36335 at 79.992 kb on + strand, within BPHYT_RS36335 at 79.992 kb on + strand, within BPHYT_RS36335 at 79.993 kb on - strand, within BPHYT_RS36335 at 80.149 kb on - strand, within BPHYT_RS36335 at 80.155 kb on - strand, within BPHYT_RS36335 at 80.155 kb on - strand, within BPHYT_RS36335 at 80.248 kb on + strand, within BPHYT_RS36335 at 80.248 kb on + strand, within BPHYT_RS36335 at 80.248 kb on + strand, within BPHYT_RS36335 at 80.249 kb on - strand, within BPHYT_RS36335 at 80.249 kb on - strand, within BPHYT_RS36335 at 80.249 kb on - strand, within BPHYT_RS36335 at 80.251 kb on - strand, within BPHYT_RS36335 at 80.573 kb on + strand at 80.879 kb on - strand at 80.995 kb on + strand at 80.996 kb on - strand at 80.996 kb on - strand at 80.996 kb on - strand at 80.996 kb on - strand at 80.996 kb on - strand at 81.149 kb on + strand at 81.149 kb on + strand at 81.149 kb on + strand at 81.149 kb on + strand at 81.149 kb on + strand at 81.150 kb on - strand at 81.312 kb on + strand, within BPHYT_RS36340
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1 remove 78,761 + BPHYT_RS36330 0.10 -0.9 78,762 - BPHYT_RS36330 0.10 -0.6 78,886 + BPHYT_RS36330 0.24 -0.2 78,887 - BPHYT_RS36330 0.24 -0.1 78,889 + BPHYT_RS36330 0.24 +0.1 78,889 + BPHYT_RS36330 0.24 -0.1 78,889 + BPHYT_RS36330 0.24 +0.1 78,890 - BPHYT_RS36330 0.24 -0.7 78,964 + BPHYT_RS36330 0.33 -0.1 79,012 + BPHYT_RS36330 0.38 -0.5 79,023 - BPHYT_RS36330 0.39 -0.9 79,066 + BPHYT_RS36330 0.44 +0.6 79,066 + BPHYT_RS36330 0.44 -1.8 79,066 + BPHYT_RS36330 0.44 +0.2 79,066 + BPHYT_RS36330 0.44 -0.1 79,067 - BPHYT_RS36330 0.44 +0.2 79,145 - BPHYT_RS36330 0.53 +0.4 79,207 + BPHYT_RS36330 0.60 +1.0 79,208 - BPHYT_RS36330 0.60 -0.2 79,442 + BPHYT_RS36330 0.86 +0.9 79,459 + BPHYT_RS36330 0.88 -0.3 79,459 + BPHYT_RS36330 0.88 -0.7 79,493 - -0.7 79,528 - -0.3 79,528 - -0.1 79,528 - -1.2 79,963 - BPHYT_RS36335 0.32 -0.4 79,992 + BPHYT_RS36335 0.36 -0.1 79,992 + BPHYT_RS36335 0.36 -0.7 79,992 + BPHYT_RS36335 0.36 +0.6 79,993 - BPHYT_RS36335 0.36 -0.6 80,149 - BPHYT_RS36335 0.57 -1.4 80,155 - BPHYT_RS36335 0.57 +0.1 80,155 - BPHYT_RS36335 0.57 -1.5 80,248 + BPHYT_RS36335 0.70 -0.2 80,248 + BPHYT_RS36335 0.70 -0.5 80,248 + BPHYT_RS36335 0.70 -0.0 80,249 - BPHYT_RS36335 0.70 +0.1 80,249 - BPHYT_RS36335 0.70 +1.3 80,249 - BPHYT_RS36335 0.70 +0.8 80,251 - BPHYT_RS36335 0.70 -0.3 80,573 + +0.1 80,879 - +0.1 80,995 + +1.2 80,996 - +0.9 80,996 - -2.5 80,996 - +0.4 80,996 - -1.3 80,996 - -0.8 81,149 + -0.4 81,149 + -0.3 81,149 + -0.4 81,149 + -0.2 81,149 + -0.9 81,150 - -0.2 81,312 + BPHYT_RS36340 0.31 +0.4
Or see this region's nucleotide sequence