Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34155

Experiment: 36hr PHYTO11 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO11 MOI 1
3,265,316	+		BPHYT_RS34145	0.87	-1.5
3,265,316	+		BPHYT_RS34145	0.87	-0.4
3,265,316	+		BPHYT_RS34145	0.87	+0.3
3,265,513	-				+0.4
3,265,675	+		BPHYT_RS34150	0.21	-0.6
3,265,675	+		BPHYT_RS34150	0.21	+0.3
3,265,676	-		BPHYT_RS34150	0.21	+0.9
3,265,708	-		BPHYT_RS34150	0.26	-0.0
3,265,963	+		BPHYT_RS34150	0.68	-0.1
3,266,143	-				-0.3
3,266,148	+				-1.4
3,266,149	-				-0.2
3,266,197	+				-0.4
3,266,197	+				+0.7
3,266,325	+				-1.2
3,266,325	+				-0.3
3,266,413	-		BPHYT_RS34155	0.14	-1.2
3,267,227	-				-0.1
3,267,242	+				+0.1
3,267,243	-				+0.5
3,267,359	+				-0.8
3,267,360	-				+1.0
3,267,360	-				-0.7
3,267,360	-				-1.0
3,267,461	+		BPHYT_RS34160	0.34	-0.6
3,267,461	+		BPHYT_RS34160	0.34	-0.1
3,267,461	+		BPHYT_RS34160	0.34	+0.3
3,267,462	-		BPHYT_RS34160	0.35	+0.5
3,267,462	-		BPHYT_RS34160	0.35	-0.2
3,267,465	-		BPHYT_RS34160	0.36	+1.5
3,267,465	-		BPHYT_RS34160	0.36	+0.4
3,267,465	-		BPHYT_RS34160	0.36	-0.1
3,267,465	-		BPHYT_RS34160	0.36	+0.8
3,267,527	+		BPHYT_RS34160	0.56	-0.5
3,267,528	-		BPHYT_RS34160	0.57	+0.4
3,267,657	+				-1.1
3,267,682	-				+0.8
3,267,747	+				+1.7
3,267,747	+				+0.2
3,267,748	-				+0.6
3,267,800	+				+0.5
3,267,800	+				-0.5
3,267,801	-				-0.7
3,267,801	-				-0.8
3,267,801	-				-0.6
3,267,924	-				-0.5
3,267,924	-				+1.3
3,267,924	-				+0.0
3,268,037	+				-1.4
3,268,038	-				-0.8
3,268,038	-				-1.9
3,268,103	+				+2.2
3,268,103	+				-0.3
3,268,104	-				-1.3
3,268,104	-				+0.1
3,268,131	+				+0.6
3,268,132	-				-0.1
3,268,132	-				+0.4
3,268,132	-				+0.8
3,268,132	-				+0.5
3,268,178	+				-0.1
3,268,184	+				+0.9
3,268,184	+				-0.5
3,268,185	-				-1.2
3,268,185	-				-0.8