Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32845

Experiment: 36hr PHYTO11 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS32840 and BPHYT_RS32845 are separated by 729 nucleotidesBPHYT_RS32845 and BPHYT_RS32850 are separated by 118 nucleotidesBPHYT_RS32850 and BPHYT_RS32855 are separated by 109 nucleotides BPHYT_RS32840: BPHYT_RS32840 - hypothetical protein, at 2,949,239 to 2,949,541 _RS32840 BPHYT_RS32845: BPHYT_RS32845 - ABC transporter substrate-binding protein, at 2,950,271 to 2,951,389 _RS32845 BPHYT_RS32850: BPHYT_RS32850 - transcriptional regulator, at 2,951,508 to 2,951,870 _RS32850 BPHYT_RS32855: BPHYT_RS32855 - TetR family transcriptional regulator, at 2,951,980 to 2,952,474 _RS32855 Position (kb) 2950 2951 2952Strain fitness (log2 ratio) -1 0 1at 2949.675 kb on - strandat 2949.873 kb on - strandat 2950.124 kb on + strandat 2950.454 kb on + strand, within BPHYT_RS32845at 2950.463 kb on + strand, within BPHYT_RS32845at 2950.864 kb on + strand, within BPHYT_RS32845at 2951.169 kb on - strandat 2951.200 kb on + strand, within BPHYT_RS32845at 2951.522 kb on + strandat 2951.555 kb on + strand, within BPHYT_RS32850at 2951.706 kb on + strand, within BPHYT_RS32850

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1
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2,949,675 - -0.1
2,949,873 - +0.5
2,950,124 + +1.0
2,950,454 + BPHYT_RS32845 0.16 +0.4
2,950,463 + BPHYT_RS32845 0.17 +0.3
2,950,864 + BPHYT_RS32845 0.53 +0.8
2,951,169 - +0.5
2,951,200 + BPHYT_RS32845 0.83 -0.4
2,951,522 + -0.7
2,951,555 + BPHYT_RS32850 0.13 -0.7
2,951,706 + BPHYT_RS32850 0.55 -0.2

Or see this region's nucleotide sequence