Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30900

Experiment: 36hr PHYTO11 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30890 and BPHYT_RS30895 are separated by 128 nucleotidesBPHYT_RS30895 and BPHYT_RS30900 are separated by 417 nucleotidesBPHYT_RS30900 and BPHYT_RS30905 overlap by 23 nucleotides BPHYT_RS30890: BPHYT_RS30890 - hypothetical protein, at 2,484,292 to 2,485,062 _RS30890 BPHYT_RS30895: BPHYT_RS30895 - hypothetical protein, at 2,485,191 to 2,485,400 _RS30895 BPHYT_RS30900: BPHYT_RS30900 - transcriptional regulator, at 2,485,818 to 2,486,450 _RS30900 BPHYT_RS30905: BPHYT_RS30905 - histidine kinase, at 2,486,428 to 2,488,089 _RS30905 Position (kb) 2485 2486 2487Strain fitness (log2 ratio) -1 0 1at 2485.600 kb on - strandat 2485.984 kb on - strand, within BPHYT_RS30900at 2485.987 kb on - strand, within BPHYT_RS30900at 2486.150 kb on - strand, within BPHYT_RS30900at 2486.984 kb on - strand, within BPHYT_RS30905at 2487.321 kb on - strand, within BPHYT_RS30905

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1
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2,485,600 - +0.6
2,485,984 - BPHYT_RS30900 0.26 -1.5
2,485,987 - BPHYT_RS30900 0.27 +0.5
2,486,150 - BPHYT_RS30900 0.52 -0.9
2,486,984 - BPHYT_RS30905 0.33 -0.6
2,487,321 - BPHYT_RS30905 0.54 -0.8

Or see this region's nucleotide sequence