Experiment: 36hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS27150 and BPHYT_RS27155 are separated by 191 nucleotides BPHYT_RS27155 and BPHYT_RS27160 are separated by 349 nucleotides BPHYT_RS27160 and BPHYT_RS27165 are separated by 259 nucleotides BPHYT_RS27165 and BPHYT_RS27170 are separated by 32 nucleotides
BPHYT_RS27150: BPHYT_RS27150 - patatin, at 1,669,513 to 1,670,625
_RS27150
BPHYT_RS27155: BPHYT_RS27155 - peroxiredoxin, at 1,670,817 to 1,671,242
_RS27155
BPHYT_RS27160: BPHYT_RS27160 - hypothetical protein, at 1,671,592 to 1,671,900
_RS27160
BPHYT_RS27165: BPHYT_RS27165 - 4-carboxymuconolactone decarboxylase, at 1,672,160 to 1,672,714
_RS27165
BPHYT_RS27170: BPHYT_RS27170 - hypothetical protein, at 1,672,747 to 1,674,075
_RS27170
Position (kb) 1671
1672 Strain fitness (log2 ratio) -2
-1
0
1 at 1670.634 kb on - strand at 1671.149 kb on - strand, within BPHYT_RS27155 at 1671.751 kb on + strand, within BPHYT_RS27160 at 1671.969 kb on - strand at 1672.102 kb on + strand at 1672.131 kb on + strand at 1672.131 kb on + strand at 1672.161 kb on + strand at 1672.161 kb on + strand at 1672.191 kb on - strand at 1672.239 kb on + strand, within BPHYT_RS27165 at 1672.239 kb on + strand, within BPHYT_RS27165 at 1672.461 kb on + strand, within BPHYT_RS27165 at 1672.461 kb on + strand, within BPHYT_RS27165 at 1672.461 kb on + strand, within BPHYT_RS27165 at 1672.462 kb on - strand, within BPHYT_RS27165 at 1672.592 kb on - strand, within BPHYT_RS27165 at 1672.886 kb on + strand, within BPHYT_RS27170
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1 remove 1,670,634 - +0.9 1,671,149 - BPHYT_RS27155 0.78 -0.4 1,671,751 + BPHYT_RS27160 0.51 -1.8 1,671,969 - +1.4 1,672,102 + -0.4 1,672,131 + -1.0 1,672,131 + -0.6 1,672,161 + +0.3 1,672,161 + +0.4 1,672,191 - +0.7 1,672,239 + BPHYT_RS27165 0.14 -0.8 1,672,239 + BPHYT_RS27165 0.14 -2.0 1,672,461 + BPHYT_RS27165 0.54 +0.4 1,672,461 + BPHYT_RS27165 0.54 +0.0 1,672,461 + BPHYT_RS27165 0.54 -0.2 1,672,462 - BPHYT_RS27165 0.54 -0.2 1,672,592 - BPHYT_RS27165 0.78 -1.6 1,672,886 + BPHYT_RS27170 0.10 +0.1
Or see this region's nucleotide sequence