Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26570

Experiment: 36hr PHYTO11 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26560 and BPHYT_RS26565 overlap by 4 nucleotidesBPHYT_RS26565 and BPHYT_RS26570 are separated by 57 nucleotidesBPHYT_RS26570 and BPHYT_RS26575 are separated by 46 nucleotides BPHYT_RS26560: BPHYT_RS26560 - murein hydrolase transporter LrgA, at 1,528,349 to 1,528,720 _RS26560 BPHYT_RS26565: BPHYT_RS26565 - membrane protein, at 1,528,717 to 1,529,457 _RS26565 BPHYT_RS26570: BPHYT_RS26570 - 5'-nucleotidase, at 1,529,515 to 1,530,294 _RS26570 BPHYT_RS26575: BPHYT_RS26575 - hypothetical protein, at 1,530,341 to 1,531,324 _RS26575 Position (kb) 1529 1530 1531Strain fitness (log2 ratio) -1 0 1 2 3at 1528.539 kb on + strand, within BPHYT_RS26560at 1529.226 kb on - strand, within BPHYT_RS26565at 1529.480 kb on + strandat 1529.481 kb on - strandat 1529.524 kb on + strandat 1530.142 kb on + strand, within BPHYT_RS26570at 1530.685 kb on + strand, within BPHYT_RS26575at 1531.149 kb on - strand, within BPHYT_RS26575

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1
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1,528,539 + BPHYT_RS26560 0.51 +0.6
1,529,226 - BPHYT_RS26565 0.69 +2.8
1,529,480 + +0.2
1,529,481 - +0.0
1,529,524 + -1.0
1,530,142 + BPHYT_RS26570 0.80 -1.2
1,530,685 + BPHYT_RS26575 0.35 -0.9
1,531,149 - BPHYT_RS26575 0.82 +1.0

Or see this region's nucleotide sequence