Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26350

Experiment: 36hr PHYTO11 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26340 and BPHYT_RS26345 are separated by 481 nucleotidesBPHYT_RS26345 and BPHYT_RS26350 are separated by 155 nucleotidesBPHYT_RS26350 and BPHYT_RS26355 are separated by 51 nucleotidesBPHYT_RS26355 and BPHYT_RS26360 are separated by 199 nucleotidesBPHYT_RS26360 and BPHYT_RS26365 are separated by 160 nucleotides BPHYT_RS26340: BPHYT_RS26340 - cupin, at 1,483,570 to 1,484,115 _RS26340 BPHYT_RS26345: BPHYT_RS26345 - hypothetical protein, at 1,484,597 to 1,484,857 _RS26345 BPHYT_RS26350: BPHYT_RS26350 - hypothetical protein, at 1,485,013 to 1,485,249 _RS26350 BPHYT_RS26355: BPHYT_RS26355 - hypothetical protein, at 1,485,301 to 1,485,546 _RS26355 BPHYT_RS26360: BPHYT_RS26360 - hypothetical protein, at 1,485,746 to 1,485,943 _RS26360 BPHYT_RS26365: BPHYT_RS26365 - oxidoreductase molybdopterin subunit, at 1,486,104 to 1,488,470 _RS26365 Position (kb) 1485 1486Strain fitness (log2 ratio) -2 -1 0 1at 1484.029 kb on - strand, within BPHYT_RS26340at 1484.295 kb on + strandat 1484.295 kb on + strandat 1484.302 kb on + strandat 1484.303 kb on - strandat 1484.773 kb on - strand, within BPHYT_RS26345at 1485.248 kb on - strandat 1485.467 kb on + strand, within BPHYT_RS26355at 1485.492 kb on - strand, within BPHYT_RS26355

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1
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1,484,029 - BPHYT_RS26340 0.84 -0.0
1,484,295 + +1.3
1,484,295 + -0.3
1,484,302 + +0.0
1,484,303 - +1.3
1,484,773 - BPHYT_RS26345 0.67 -0.2
1,485,248 - -0.5
1,485,467 + BPHYT_RS26355 0.67 -2.1
1,485,492 - BPHYT_RS26355 0.78 -1.2

Or see this region's nucleotide sequence