Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24675

Experiment: 36hr PHYTO11 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS24665 and BPHYT_RS24670 overlap by 4 nucleotidesBPHYT_RS24670 and BPHYT_RS24675 overlap by 4 nucleotidesBPHYT_RS24675 and BPHYT_RS24680 are separated by 11 nucleotidesBPHYT_RS24680 and BPHYT_RS24685 are separated by 242 nucleotides BPHYT_RS24665: BPHYT_RS24665 - ABC transporter permease, at 1,103,491 to 1,104,378 _RS24665 BPHYT_RS24670: BPHYT_RS24670 - ABC transporter permease, at 1,104,375 to 1,105,334 _RS24670 BPHYT_RS24675: BPHYT_RS24675 - spermidine/putrescine ABC transporter substrate-binding protein, at 1,105,331 to 1,106,425 _RS24675 BPHYT_RS24680: BPHYT_RS24680 - hypothetical protein, at 1,106,437 to 1,106,712 _RS24680 BPHYT_RS24685: BPHYT_RS24685 - LysR family transcriptional regulator, at 1,106,955 to 1,107,848 _RS24685 Position (kb) 1105 1106 1107Strain fitness (log2 ratio) -2 -1 0 1 2at 1104.615 kb on + strand, within BPHYT_RS24670at 1104.796 kb on + strand, within BPHYT_RS24670at 1105.353 kb on + strandat 1105.635 kb on + strand, within BPHYT_RS24675at 1105.636 kb on - strand, within BPHYT_RS24675at 1105.636 kb on - strand, within BPHYT_RS24675at 1105.696 kb on - strand, within BPHYT_RS24675at 1105.932 kb on + strand, within BPHYT_RS24675at 1105.968 kb on + strand, within BPHYT_RS24675at 1105.969 kb on - strand, within BPHYT_RS24675at 1105.969 kb on - strand, within BPHYT_RS24675at 1106.249 kb on - strand, within BPHYT_RS24675at 1106.490 kb on - strand, within BPHYT_RS24680at 1106.529 kb on + strand, within BPHYT_RS24680at 1106.529 kb on + strand, within BPHYT_RS24680at 1106.530 kb on - strand, within BPHYT_RS24680at 1106.582 kb on + strand, within BPHYT_RS24680at 1106.816 kb on - strandat 1107.040 kb on + strandat 1107.093 kb on + strand, within BPHYT_RS24685at 1107.094 kb on - strand, within BPHYT_RS24685at 1107.384 kb on + strand, within BPHYT_RS24685at 1107.385 kb on - strand, within BPHYT_RS24685

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1
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1,104,615 + BPHYT_RS24670 0.25 -1.2
1,104,796 + BPHYT_RS24670 0.44 -0.1
1,105,353 + -1.3
1,105,635 + BPHYT_RS24675 0.28 -0.0
1,105,636 - BPHYT_RS24675 0.28 +2.4
1,105,636 - BPHYT_RS24675 0.28 -0.2
1,105,696 - BPHYT_RS24675 0.33 +0.9
1,105,932 + BPHYT_RS24675 0.55 +0.4
1,105,968 + BPHYT_RS24675 0.58 -2.2
1,105,969 - BPHYT_RS24675 0.58 -0.3
1,105,969 - BPHYT_RS24675 0.58 -0.5
1,106,249 - BPHYT_RS24675 0.84 +0.2
1,106,490 - BPHYT_RS24680 0.19 +0.2
1,106,529 + BPHYT_RS24680 0.33 +0.8
1,106,529 + BPHYT_RS24680 0.33 -0.8
1,106,530 - BPHYT_RS24680 0.34 -0.1
1,106,582 + BPHYT_RS24680 0.53 +0.3
1,106,816 - -0.1
1,107,040 + +0.8
1,107,093 + BPHYT_RS24685 0.15 +0.8
1,107,094 - BPHYT_RS24685 0.16 -0.1
1,107,384 + BPHYT_RS24685 0.48 -0.7
1,107,385 - BPHYT_RS24685 0.48 -0.9

Or see this region's nucleotide sequence