Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23895

Experiment: 36hr PHYTO11 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23890 and BPHYT_RS23895 are separated by 65 nucleotidesBPHYT_RS23895 and BPHYT_RS23900 are separated by 195 nucleotides BPHYT_RS23890: BPHYT_RS23890 - MFS transporter, at 926,458 to 927,759 _RS23890 BPHYT_RS23895: BPHYT_RS23895 - hypothetical protein, at 927,825 to 928,604 _RS23895 BPHYT_RS23900: BPHYT_RS23900 - LysR family transcriptional regulator, at 928,800 to 929,738 _RS23900 Position (kb) 927 928 929Strain fitness (log2 ratio) -2 -1 0 1 2at 926.849 kb on + strand, within BPHYT_RS23890at 926.874 kb on - strand, within BPHYT_RS23890at 926.946 kb on - strand, within BPHYT_RS23890at 927.972 kb on + strand, within BPHYT_RS23895at 928.522 kb on + strand, within BPHYT_RS23895at 928.570 kb on - strandat 928.623 kb on + strandat 928.642 kb on - strandat 928.665 kb on - strandat 929.105 kb on + strand, within BPHYT_RS23900at 929.106 kb on - strand, within BPHYT_RS23900at 929.559 kb on + strand, within BPHYT_RS23900at 929.559 kb on + strand, within BPHYT_RS23900

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1
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926,849 + BPHYT_RS23890 0.30 +2.4
926,874 - BPHYT_RS23890 0.32 +1.4
926,946 - BPHYT_RS23890 0.37 +0.6
927,972 + BPHYT_RS23895 0.19 -1.5
928,522 + BPHYT_RS23895 0.89 -2.5
928,570 - +0.4
928,623 + +0.2
928,642 - +0.3
928,665 - +0.6
929,105 + BPHYT_RS23900 0.32 +0.0
929,106 - BPHYT_RS23900 0.33 +1.0
929,559 + BPHYT_RS23900 0.81 -2.5
929,559 + BPHYT_RS23900 0.81 -0.6

Or see this region's nucleotide sequence