Experiment: 36hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23815 and BPHYT_RS23820 are separated by 202 nucleotides BPHYT_RS23820 and BPHYT_RS23825 are separated by 170 nucleotides BPHYT_RS23825 and BPHYT_RS23830 are separated by 190 nucleotides
BPHYT_RS23815: BPHYT_RS23815 - LysR family transcriptional regulator, at 909,966 to 910,961
_RS23815
BPHYT_RS23820: BPHYT_RS23820 - fusaric acid resistance protein, at 911,164 to 913,332
_RS23820
BPHYT_RS23825: BPHYT_RS23825 - hypothetical protein, at 913,503 to 913,718
_RS23825
BPHYT_RS23830: BPHYT_RS23830 - acetyl-CoA hydrolase, at 913,909 to 915,423
_RS23830
Position (kb) 911
912
913
914 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 910.240 kb on - strand, within BPHYT_RS23815 at 910.448 kb on - strand, within BPHYT_RS23815 at 910.550 kb on + strand, within BPHYT_RS23815 at 910.645 kb on + strand, within BPHYT_RS23815 at 910.747 kb on - strand, within BPHYT_RS23815 at 910.754 kb on + strand, within BPHYT_RS23815 at 910.755 kb on - strand, within BPHYT_RS23815 at 910.755 kb on - strand, within BPHYT_RS23815 at 910.755 kb on - strand, within BPHYT_RS23815 at 910.755 kb on - strand, within BPHYT_RS23815 at 910.755 kb on - strand, within BPHYT_RS23815 at 910.944 kb on - strand at 910.956 kb on - strand at 910.971 kb on + strand at 910.971 kb on + strand at 910.972 kb on - strand at 910.990 kb on + strand at 911.058 kb on - strand at 911.068 kb on + strand at 911.068 kb on + strand at 911.079 kb on + strand at 911.079 kb on + strand at 911.080 kb on - strand at 911.080 kb on - strand at 911.503 kb on + strand, within BPHYT_RS23820 at 911.504 kb on - strand, within BPHYT_RS23820 at 911.504 kb on - strand, within BPHYT_RS23820 at 911.504 kb on - strand, within BPHYT_RS23820 at 911.504 kb on - strand, within BPHYT_RS23820 at 911.515 kb on - strand, within BPHYT_RS23820 at 911.693 kb on + strand, within BPHYT_RS23820 at 912.052 kb on + strand, within BPHYT_RS23820 at 912.238 kb on + strand, within BPHYT_RS23820 at 912.278 kb on - strand, within BPHYT_RS23820 at 912.303 kb on + strand, within BPHYT_RS23820 at 912.334 kb on + strand, within BPHYT_RS23820 at 912.556 kb on + strand, within BPHYT_RS23820 at 912.571 kb on + strand, within BPHYT_RS23820 at 912.571 kb on + strand, within BPHYT_RS23820 at 912.571 kb on + strand, within BPHYT_RS23820 at 912.572 kb on - strand, within BPHYT_RS23820 at 912.572 kb on - strand, within BPHYT_RS23820 at 912.572 kb on - strand, within BPHYT_RS23820 at 912.572 kb on - strand, within BPHYT_RS23820 at 912.572 kb on - strand, within BPHYT_RS23820 at 912.572 kb on - strand, within BPHYT_RS23820 at 912.577 kb on + strand, within BPHYT_RS23820 at 912.733 kb on + strand, within BPHYT_RS23820 at 912.876 kb on - strand, within BPHYT_RS23820 at 913.373 kb on - strand at 913.430 kb on - strand at 913.431 kb on + strand at 913.432 kb on - strand at 913.486 kb on - strand at 913.607 kb on + strand, within BPHYT_RS23825 at 913.649 kb on + strand, within BPHYT_RS23825 at 913.650 kb on - strand, within BPHYT_RS23825 at 913.704 kb on + strand at 913.736 kb on - strand at 913.745 kb on - strand at 913.745 kb on - strand at 913.745 kb on - strand at 913.890 kb on + strand at 913.912 kb on + strand at 914.301 kb on + strand, within BPHYT_RS23830
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1 remove 910,240 - BPHYT_RS23815 0.28 +2.0 910,448 - BPHYT_RS23815 0.48 -0.3 910,550 + BPHYT_RS23815 0.59 -0.2 910,645 + BPHYT_RS23815 0.68 +0.4 910,747 - BPHYT_RS23815 0.78 -0.6 910,754 + BPHYT_RS23815 0.79 +1.3 910,755 - BPHYT_RS23815 0.79 -0.4 910,755 - BPHYT_RS23815 0.79 -0.1 910,755 - BPHYT_RS23815 0.79 +1.2 910,755 - BPHYT_RS23815 0.79 -0.0 910,755 - BPHYT_RS23815 0.79 +1.4 910,944 - -0.5 910,956 - -1.3 910,971 + -0.1 910,971 + -0.6 910,972 - -0.2 910,990 + -1.3 911,058 - +1.4 911,068 + -0.4 911,068 + -0.0 911,079 + +0.2 911,079 + +0.3 911,080 - +0.4 911,080 - +1.9 911,503 + BPHYT_RS23820 0.16 +0.2 911,504 - BPHYT_RS23820 0.16 +1.4 911,504 - BPHYT_RS23820 0.16 +0.3 911,504 - BPHYT_RS23820 0.16 -0.1 911,504 - BPHYT_RS23820 0.16 +4.7 911,515 - BPHYT_RS23820 0.16 +0.5 911,693 + BPHYT_RS23820 0.24 -1.0 912,052 + BPHYT_RS23820 0.41 +0.4 912,238 + BPHYT_RS23820 0.50 -0.4 912,278 - BPHYT_RS23820 0.51 -0.9 912,303 + BPHYT_RS23820 0.53 +1.1 912,334 + BPHYT_RS23820 0.54 +0.4 912,556 + BPHYT_RS23820 0.64 +0.4 912,571 + BPHYT_RS23820 0.65 -0.5 912,571 + BPHYT_RS23820 0.65 -1.2 912,571 + BPHYT_RS23820 0.65 +1.1 912,572 - BPHYT_RS23820 0.65 +0.3 912,572 - BPHYT_RS23820 0.65 -0.4 912,572 - BPHYT_RS23820 0.65 +0.0 912,572 - BPHYT_RS23820 0.65 -0.8 912,572 - BPHYT_RS23820 0.65 -0.1 912,572 - BPHYT_RS23820 0.65 -0.0 912,577 + BPHYT_RS23820 0.65 +1.0 912,733 + BPHYT_RS23820 0.72 +0.0 912,876 - BPHYT_RS23820 0.79 +0.5 913,373 - -0.3 913,430 - +0.1 913,431 + +1.5 913,432 - +0.3 913,486 - +0.6 913,607 + BPHYT_RS23825 0.48 -0.1 913,649 + BPHYT_RS23825 0.68 +0.6 913,650 - BPHYT_RS23825 0.68 +2.3 913,704 + -1.7 913,736 - -0.7 913,745 - +0.4 913,745 - +0.9 913,745 - -0.4 913,890 + +1.0 913,912 + +0.4 914,301 + BPHYT_RS23830 0.26 +0.2
Or see this region's nucleotide sequence