Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22295

Experiment: 36hr PHYTO11 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS22285 and BPHYT_RS22290 are separated by 93 nucleotidesBPHYT_RS22290 and BPHYT_RS22295 are separated by 121 nucleotidesBPHYT_RS22295 and BPHYT_RS22300 overlap by 25 nucleotidesBPHYT_RS22300 and BPHYT_RS22305 are separated by 296 nucleotides BPHYT_RS22285: BPHYT_RS22285 - hypothetical protein, at 556,479 to 556,799 _RS22285 BPHYT_RS22290: BPHYT_RS22290 - membrane protein, at 556,893 to 557,645 _RS22290 BPHYT_RS22295: BPHYT_RS22295 - LysR family transcriptional regulator, at 557,767 to 558,645 _RS22295 BPHYT_RS22300: BPHYT_RS22300 - hypothetical protein, at 558,621 to 559,082 _RS22300 BPHYT_RS22305: BPHYT_RS22305 - hypothetical protein, at 559,379 to 559,573 _RS22305 Position (kb) 557 558 559Strain fitness (log2 ratio) -2 -1 0 1at 556.985 kb on - strand, within BPHYT_RS22290at 556.985 kb on - strand, within BPHYT_RS22290at 557.121 kb on + strand, within BPHYT_RS22290at 557.801 kb on + strandat 558.013 kb on - strand, within BPHYT_RS22295at 558.757 kb on + strand, within BPHYT_RS22300at 558.813 kb on - strand, within BPHYT_RS22300at 559.167 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1
remove
556,985 - BPHYT_RS22290 0.12 -0.2
556,985 - BPHYT_RS22290 0.12 -0.3
557,121 + BPHYT_RS22290 0.30 +0.8
557,801 + -0.0
558,013 - BPHYT_RS22295 0.28 +0.0
558,757 + BPHYT_RS22300 0.29 -2.0
558,813 - BPHYT_RS22300 0.42 -0.8
559,167 - -1.3

Or see this region's nucleotide sequence