Experiment: 36hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21385 and BPHYT_RS21390 are separated by 266 nucleotides BPHYT_RS21390 and BPHYT_RS21395 are separated by 26 nucleotides
BPHYT_RS21385: BPHYT_RS21385 - short-chain dehydrogenase, at 357,489 to 358,082
_RS21385
BPHYT_RS21390: BPHYT_RS21390 - metal-binding protein, at 358,349 to 359,230
_RS21390
BPHYT_RS21395: BPHYT_RS21395 - cytochrome P460, at 359,257 to 360,294
_RS21395
Position (kb) 358
359
360 Strain fitness (log2 ratio) -2
-1
0
1 at 357.935 kb on - strand, within BPHYT_RS21385 at 358.082 kb on + strand at 358.246 kb on - strand at 358.439 kb on + strand, within BPHYT_RS21390 at 358.440 kb on - strand, within BPHYT_RS21390 at 358.608 kb on + strand, within BPHYT_RS21390 at 358.610 kb on + strand, within BPHYT_RS21390 at 358.610 kb on + strand, within BPHYT_RS21390 at 358.610 kb on + strand, within BPHYT_RS21390 at 358.610 kb on + strand, within BPHYT_RS21390 at 358.611 kb on - strand, within BPHYT_RS21390 at 358.611 kb on - strand, within BPHYT_RS21390 at 358.612 kb on + strand, within BPHYT_RS21390 at 358.613 kb on - strand, within BPHYT_RS21390 at 358.613 kb on - strand, within BPHYT_RS21390 at 358.613 kb on - strand, within BPHYT_RS21390 at 358.946 kb on + strand, within BPHYT_RS21390 at 358.947 kb on - strand, within BPHYT_RS21390 at 359.363 kb on - strand, within BPHYT_RS21395 at 359.447 kb on + strand, within BPHYT_RS21395 at 359.448 kb on - strand, within BPHYT_RS21395 at 359.501 kb on + strand, within BPHYT_RS21395 at 359.501 kb on + strand, within BPHYT_RS21395 at 359.502 kb on - strand, within BPHYT_RS21395 at 359.735 kb on + strand, within BPHYT_RS21395 at 359.805 kb on + strand, within BPHYT_RS21395 at 359.805 kb on + strand, within BPHYT_RS21395 at 359.888 kb on + strand, within BPHYT_RS21395 at 360.046 kb on + strand, within BPHYT_RS21395 at 360.047 kb on - strand, within BPHYT_RS21395 at 360.071 kb on + strand, within BPHYT_RS21395 at 360.071 kb on + strand, within BPHYT_RS21395 at 360.072 kb on - strand, within BPHYT_RS21395
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1 remove 357,935 - BPHYT_RS21385 0.75 +0.6 358,082 + -0.1 358,246 - -2.2 358,439 + BPHYT_RS21390 0.10 -0.1 358,440 - BPHYT_RS21390 0.10 +0.9 358,608 + BPHYT_RS21390 0.29 -0.3 358,610 + BPHYT_RS21390 0.30 -0.6 358,610 + BPHYT_RS21390 0.30 -0.1 358,610 + BPHYT_RS21390 0.30 -0.7 358,610 + BPHYT_RS21390 0.30 +0.0 358,611 - BPHYT_RS21390 0.30 -0.3 358,611 - BPHYT_RS21390 0.30 -0.1 358,612 + BPHYT_RS21390 0.30 -1.9 358,613 - BPHYT_RS21390 0.30 -0.6 358,613 - BPHYT_RS21390 0.30 -0.8 358,613 - BPHYT_RS21390 0.30 -2.3 358,946 + BPHYT_RS21390 0.68 -0.0 358,947 - BPHYT_RS21390 0.68 -0.8 359,363 - BPHYT_RS21395 0.10 -0.5 359,447 + BPHYT_RS21395 0.18 -2.0 359,448 - BPHYT_RS21395 0.18 +1.7 359,501 + BPHYT_RS21395 0.24 -0.8 359,501 + BPHYT_RS21395 0.24 -0.4 359,502 - BPHYT_RS21395 0.24 +0.1 359,735 + BPHYT_RS21395 0.46 +1.1 359,805 + BPHYT_RS21395 0.53 -0.1 359,805 + BPHYT_RS21395 0.53 +0.4 359,888 + BPHYT_RS21395 0.61 -0.1 360,046 + BPHYT_RS21395 0.76 -0.0 360,047 - BPHYT_RS21395 0.76 -0.4 360,071 + BPHYT_RS21395 0.78 +0.1 360,071 + BPHYT_RS21395 0.78 -0.5 360,072 - BPHYT_RS21395 0.79 -2.1
Or see this region's nucleotide sequence