Experiment: 36hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19785 and BPHYT_RS19790 are separated by 16 nucleotides BPHYT_RS19790 and BPHYT_RS19795 overlap by 4 nucleotides BPHYT_RS19795 and BPHYT_RS19800 overlap by 8 nucleotides
BPHYT_RS19785: BPHYT_RS19785 - chemotaxis protein CheY, at 4,451,268 to 4,452,284
_RS19785
BPHYT_RS19790: BPHYT_RS19790 - peptidase M23, at 4,452,301 to 4,454,715
_RS19790
BPHYT_RS19795: BPHYT_RS19795 - chemotaxis protein CheW, at 4,454,712 to 4,455,392
_RS19795
BPHYT_RS19800: BPHYT_RS19800 - chemotaxis protein CheR, at 4,455,385 to 4,456,815
_RS19800
Position (kb) 4452
4453
4454
4455 Strain fitness (log2 ratio) -1
0
1
2 at 4451.368 kb on + strand at 4451.369 kb on - strand at 4451.408 kb on - strand, within BPHYT_RS19785 at 4451.430 kb on - strand, within BPHYT_RS19785 at 4452.208 kb on + strand at 4452.209 kb on - strand at 4452.209 kb on - strand at 4452.209 kb on - strand at 4452.308 kb on + strand at 4452.309 kb on - strand at 4452.309 kb on - strand at 4452.309 kb on - strand at 4452.309 kb on - strand at 4452.377 kb on + strand at 4452.378 kb on - strand at 4452.378 kb on - strand at 4452.378 kb on - strand at 4452.378 kb on - strand at 4452.380 kb on + strand at 4452.380 kb on + strand at 4452.381 kb on - strand at 4452.432 kb on - strand at 4452.602 kb on + strand, within BPHYT_RS19790 at 4453.107 kb on - strand, within BPHYT_RS19790 at 4453.352 kb on - strand, within BPHYT_RS19790 at 4453.622 kb on - strand, within BPHYT_RS19790 at 4453.622 kb on - strand, within BPHYT_RS19790 at 4453.622 kb on - strand, within BPHYT_RS19790 at 4453.622 kb on - strand, within BPHYT_RS19790 at 4453.622 kb on - strand, within BPHYT_RS19790 at 4453.733 kb on + strand, within BPHYT_RS19790 at 4453.734 kb on - strand at 4453.734 kb on - strand, within BPHYT_RS19790 at 4453.803 kb on + strand, within BPHYT_RS19790 at 4453.803 kb on + strand, within BPHYT_RS19790 at 4453.803 kb on + strand, within BPHYT_RS19790 at 4453.803 kb on + strand, within BPHYT_RS19790 at 4453.803 kb on + strand, within BPHYT_RS19790 at 4453.804 kb on - strand, within BPHYT_RS19790 at 4453.804 kb on - strand, within BPHYT_RS19790 at 4453.804 kb on - strand, within BPHYT_RS19790 at 4453.804 kb on - strand, within BPHYT_RS19790 at 4454.002 kb on + strand, within BPHYT_RS19790 at 4454.002 kb on + strand, within BPHYT_RS19790 at 4454.003 kb on - strand, within BPHYT_RS19790 at 4454.151 kb on + strand, within BPHYT_RS19790 at 4454.242 kb on + strand, within BPHYT_RS19790 at 4454.242 kb on + strand, within BPHYT_RS19790 at 4454.295 kb on + strand, within BPHYT_RS19790 at 4454.296 kb on - strand, within BPHYT_RS19790 at 4455.030 kb on + strand, within BPHYT_RS19795 at 4455.030 kb on + strand, within BPHYT_RS19795 at 4455.031 kb on - strand, within BPHYT_RS19795 at 4455.031 kb on - strand, within BPHYT_RS19795 at 4455.031 kb on - strand, within BPHYT_RS19795 at 4455.031 kb on - strand, within BPHYT_RS19795 at 4455.031 kb on - strand, within BPHYT_RS19795 at 4455.078 kb on - strand, within BPHYT_RS19795 at 4455.078 kb on - strand, within BPHYT_RS19795 at 4455.301 kb on - strand, within BPHYT_RS19795 at 4455.301 kb on - strand, within BPHYT_RS19795 at 4455.301 kb on - strand, within BPHYT_RS19795 at 4455.301 kb on - strand, within BPHYT_RS19795 at 4455.305 kb on - strand, within BPHYT_RS19795 at 4455.512 kb on + strand at 4455.512 kb on + strand at 4455.513 kb on - strand at 4455.513 kb on - strand at 4455.584 kb on + strand, within BPHYT_RS19800 at 4455.685 kb on + strand, within BPHYT_RS19800 at 4455.685 kb on + strand, within BPHYT_RS19800 at 4455.686 kb on - strand, within BPHYT_RS19800
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1 remove 4,451,368 + +0.1 4,451,369 - +0.4 4,451,408 - BPHYT_RS19785 0.14 +0.0 4,451,430 - BPHYT_RS19785 0.16 +1.4 4,452,208 + +0.0 4,452,209 - -0.1 4,452,209 - -0.6 4,452,209 - -0.5 4,452,308 + -0.5 4,452,309 - -0.2 4,452,309 - -0.0 4,452,309 - -0.1 4,452,309 - -0.3 4,452,377 + -0.6 4,452,378 - -1.1 4,452,378 - -0.3 4,452,378 - +0.7 4,452,378 - -1.2 4,452,380 + -0.5 4,452,380 + -0.7 4,452,381 - -1.0 4,452,432 - -0.8 4,452,602 + BPHYT_RS19790 0.12 -0.3 4,453,107 - BPHYT_RS19790 0.33 -0.6 4,453,352 - BPHYT_RS19790 0.44 -1.1 4,453,622 - BPHYT_RS19790 0.55 -0.3 4,453,622 - BPHYT_RS19790 0.55 -0.1 4,453,622 - BPHYT_RS19790 0.55 -0.7 4,453,622 - BPHYT_RS19790 0.55 -0.0 4,453,622 - BPHYT_RS19790 0.55 -0.0 4,453,733 + BPHYT_RS19790 0.59 -0.4 4,453,734 - +2.5 4,453,734 - BPHYT_RS19790 0.59 -0.6 4,453,803 + BPHYT_RS19790 0.62 -0.0 4,453,803 + BPHYT_RS19790 0.62 -0.1 4,453,803 + BPHYT_RS19790 0.62 -0.1 4,453,803 + BPHYT_RS19790 0.62 -0.6 4,453,803 + BPHYT_RS19790 0.62 -0.1 4,453,804 - BPHYT_RS19790 0.62 -0.3 4,453,804 - BPHYT_RS19790 0.62 -0.6 4,453,804 - BPHYT_RS19790 0.62 +0.6 4,453,804 - BPHYT_RS19790 0.62 -0.3 4,454,002 + BPHYT_RS19790 0.70 -0.8 4,454,002 + BPHYT_RS19790 0.70 -1.2 4,454,003 - BPHYT_RS19790 0.70 -0.4 4,454,151 + BPHYT_RS19790 0.77 -0.4 4,454,242 + BPHYT_RS19790 0.80 -0.9 4,454,242 + BPHYT_RS19790 0.80 -0.1 4,454,295 + BPHYT_RS19790 0.83 -0.7 4,454,296 - BPHYT_RS19790 0.83 -1.0 4,455,030 + BPHYT_RS19795 0.47 -0.7 4,455,030 + BPHYT_RS19795 0.47 +0.4 4,455,031 - BPHYT_RS19795 0.47 -0.5 4,455,031 - BPHYT_RS19795 0.47 +0.3 4,455,031 - BPHYT_RS19795 0.47 -0.1 4,455,031 - BPHYT_RS19795 0.47 -0.3 4,455,031 - BPHYT_RS19795 0.47 -0.6 4,455,078 - BPHYT_RS19795 0.54 -0.0 4,455,078 - BPHYT_RS19795 0.54 +0.1 4,455,301 - BPHYT_RS19795 0.86 +0.4 4,455,301 - BPHYT_RS19795 0.86 +0.9 4,455,301 - BPHYT_RS19795 0.86 -0.1 4,455,301 - BPHYT_RS19795 0.86 +2.3 4,455,305 - BPHYT_RS19795 0.87 -0.1 4,455,512 + -0.0 4,455,512 + -0.3 4,455,513 - +0.1 4,455,513 - -0.3 4,455,584 + BPHYT_RS19800 0.14 -1.3 4,455,685 + BPHYT_RS19800 0.21 -0.5 4,455,685 + BPHYT_RS19800 0.21 -0.6 4,455,686 - BPHYT_RS19800 0.21 -0.2
Or see this region's nucleotide sequence