Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17555

Experiment: 36hr PHYTO11 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO11 MOI 1
3,974,154	-		BPHYT_RS17550	0.37	-0.6
3,974,154	-		BPHYT_RS17550	0.37	-1.2
3,974,192	+		BPHYT_RS17550	0.40	-0.5
3,974,193	-		BPHYT_RS17550	0.40	+0.6
3,974,193	-		BPHYT_RS17550	0.40	-0.3
3,974,769	+		BPHYT_RS17550	0.86	-0.1
3,974,772	-		BPHYT_RS17550	0.86	-0.2
3,974,917	-				-0.4
3,974,936	+				-0.6
3,974,937	-				+1.2
3,974,937	-				+0.6
3,974,937	-				+0.4
3,974,996	-				-0.9
3,975,047	-				+0.4
3,975,325	-		BPHYT_RS17555	0.13	+0.7
3,975,342	+		BPHYT_RS17555	0.14	-0.8
3,975,342	+		BPHYT_RS17555	0.14	-1.7
3,975,342	+		BPHYT_RS17555	0.14	-2.1
3,975,343	-		BPHYT_RS17555	0.14	+0.5
3,975,377	-		BPHYT_RS17555	0.17	-0.2
3,975,469	+		BPHYT_RS17555	0.23	-0.4
3,975,469	+		BPHYT_RS17555	0.23	-0.6
3,975,470	-		BPHYT_RS17555	0.23	+0.2
3,975,562	+		BPHYT_RS17555	0.29	+1.1
3,975,957	+		BPHYT_RS17555	0.56	-0.2
3,976,027	+		BPHYT_RS17555	0.61	-0.3
3,976,027	+		BPHYT_RS17555	0.61	+0.3
3,976,028	-		BPHYT_RS17555	0.61	-1.4
3,976,048	+		BPHYT_RS17555	0.62	-1.8
3,976,049	-		BPHYT_RS17555	0.62	-1.2
3,976,072	+		BPHYT_RS17555	0.64	-0.4
3,976,199	-		BPHYT_RS17555	0.72	-2.1
3,976,327	+		BPHYT_RS17555	0.81	-0.3
3,976,327	+		BPHYT_RS17555	0.81	+0.8
3,976,327	+		BPHYT_RS17555	0.81	-0.1
3,976,327	+		BPHYT_RS17555	0.81	-0.6
3,976,641	-				-0.6
3,976,647	+				-2.4
3,976,647	+				-1.4
3,976,647	+				+0.2
3,976,647	+				-1.1
3,976,648	-				-1.6
3,976,648	-				-0.1
3,976,648	-				+0.5
3,976,651	+				-0.3
3,976,651	+				+0.4
3,976,652	-				-0.1
3,976,667	+				+0.2
3,976,694	+				-0.2
3,976,804	+		BPHYT_RS17560	0.22	-0.8
3,976,805	-		BPHYT_RS17560	0.22	-0.2
3,976,805	-		BPHYT_RS17560	0.22	-0.2
3,976,805	-		BPHYT_RS17560	0.22	-0.3
3,976,805	-		BPHYT_RS17560	0.22	-1.1
3,976,934	+		BPHYT_RS17560	0.43	+0.9
3,976,935	-		BPHYT_RS17560	0.44	-0.3
3,977,086	+		BPHYT_RS17560	0.68	-0.7
3,977,087	-		BPHYT_RS17560	0.68	+0.1
3,977,114	+		BPHYT_RS17560	0.72	-0.3
3,977,114	+		BPHYT_RS17560	0.72	-0.6
3,977,114	+		BPHYT_RS17560	0.72	-0.1
3,977,115	-		BPHYT_RS17560	0.73	-0.7
3,977,187	-		BPHYT_RS17560	0.84	-0.3
3,977,313	+				+0.0
3,977,313	+				-0.5
3,977,313	+				+0.2
3,977,313	+				+1.0
3,977,314	-				-0.5
3,977,314	-				-1.9
3,977,314	-				-1.6
3,977,314	-				-0.8
3,977,319	-				-0.3
3,977,344	+				-0.4
3,977,345	-				-0.9
3,977,378	+				-0.2
3,977,487	+				-0.1
3,977,534	+				-0.3
3,977,534	+				+0.7
3,977,534	+				-0.1
3,977,589	+				-1.1
3,977,590	-				+0.3
3,977,590	-				-1.3
3,977,590	-				-0.9
3,977,590	-				-1.3
3,977,590	-				+0.4