Experiment: 36hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS15240 and BPHYT_RS15245 are separated by 106 nucleotides BPHYT_RS15245 and BPHYT_RS15250 overlap by 4 nucleotides BPHYT_RS15250 and BPHYT_RS15255 are separated by 590 nucleotides
BPHYT_RS15240: BPHYT_RS15240 - excinuclease ABC subunit A, at 3,465,076 to 3,467,760
_RS15240
BPHYT_RS15245: BPHYT_RS15245 - transposase, at 3,467,867 to 3,468,703
_RS15245
BPHYT_RS15250: BPHYT_RS15250 - transposase, at 3,468,700 to 3,469,002
_RS15250
BPHYT_RS15255: BPHYT_RS15255 - hypothetical protein, at 3,469,593 to 3,469,742
_RS15255
Position (kb)
3468
3469
3470 Strain fitness (log2 ratio)
-2
-1
0
1 at 3467.735 kb on - strand at 3467.805 kb on + strand at 3467.806 kb on - strand at 3467.829 kb on - strand at 3467.829 kb on - strand at 3469.026 kb on + strand at 3469.078 kb on - strand at 3469.083 kb on + strand at 3469.132 kb on - strand at 3469.297 kb on - strand at 3469.326 kb on + strand at 3469.326 kb on + strand at 3469.407 kb on - strand at 3469.438 kb on - strand at 3469.438 kb on - strand at 3469.443 kb on + strand at 3469.444 kb on - strand at 3469.504 kb on + strand at 3469.521 kb on + strand at 3469.521 kb on + strand at 3469.521 kb on + strand at 3469.521 kb on + strand at 3469.521 kb on + strand at 3469.521 kb on + strand at 3469.567 kb on + strand at 3469.567 kb on + strand at 3469.740 kb on + strand at 3469.743 kb on - strand at 3469.744 kb on + strand at 3469.744 kb on + strand at 3469.744 kb on + strand at 3469.744 kb on + strand at 3469.804 kb on + strand at 3469.804 kb on + strand at 3469.805 kb on - strand at 3469.968 kb on - strand at 3469.968 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1 remove 3,467,735 - +0.1 3,467,805 + +0.8 3,467,806 - -0.7 3,467,829 - -1.0 3,467,829 - +0.6 3,469,026 + -0.5 3,469,078 - -1.1 3,469,083 + +1.2 3,469,132 - -1.6 3,469,297 - +0.8 3,469,326 + +0.1 3,469,326 + -0.5 3,469,407 - +1.3 3,469,438 - -1.0 3,469,438 - -0.2 3,469,443 + -0.2 3,469,444 - +0.7 3,469,504 + +0.4 3,469,521 + +0.0 3,469,521 + -0.3 3,469,521 + -0.3 3,469,521 + -0.1 3,469,521 + -0.1 3,469,521 + +0.4 3,469,567 + +0.0 3,469,567 + +1.0 3,469,740 + +0.2 3,469,743 - +1.6 3,469,744 + -0.9 3,469,744 + +0.1 3,469,744 + -0.4 3,469,744 + +1.0 3,469,804 + -1.2 3,469,804 + +1.3 3,469,805 - +0.0 3,469,968 - -0.9 3,469,968 - -1.9
Or see this region's nucleotide sequence