Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14040

Experiment: 36hr PHYTO11 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO11 MOI 1
3,207,375	+				-0.0
3,207,376	-				-0.4
3,207,376	-				-0.2
3,207,561	+				-0.6
3,207,625	-				-0.6
3,207,674	+				+0.5
3,207,674	+				-0.0
3,207,922	+		BPHYT_RS14035	0.40	-0.4
3,207,922	+		BPHYT_RS14035	0.40	-0.1
3,207,979	+		BPHYT_RS14035	0.55	+0.4
3,207,979	+		BPHYT_RS14035	0.55	-0.0
3,207,980	-		BPHYT_RS14035	0.55	-0.4
3,207,980	-		BPHYT_RS14035	0.55	+0.6
3,207,988	+		BPHYT_RS14035	0.57	+0.8
3,207,988	+		BPHYT_RS14035	0.57	-0.7
3,207,988	+		BPHYT_RS14035	0.57	-1.9
3,208,010	-		BPHYT_RS14035	0.63	+0.9
3,208,010	-		BPHYT_RS14035	0.63	-0.5
3,208,057	+		BPHYT_RS14035	0.75	-0.1
3,208,057	+		BPHYT_RS14035	0.75	+0.9
3,208,057	+		BPHYT_RS14035	0.75	+0.0
3,208,511	+		BPHYT_RS14040	0.37	-0.8
3,208,512	-		BPHYT_RS14040	0.37	+1.8
3,208,512	-		BPHYT_RS14040	0.37	+1.1
3,208,621	+		BPHYT_RS14040	0.61	-1.8
3,208,672	+		BPHYT_RS14040	0.72	+0.4
3,208,672	+		BPHYT_RS14040	0.72	-0.5
3,208,672	+		BPHYT_RS14040	0.72	+0.4
3,208,672	+		BPHYT_RS14040	0.72	-0.1
3,208,672	+		BPHYT_RS14040	0.72	-0.2
3,208,673	-		BPHYT_RS14040	0.72	-0.1
3,208,673	-		BPHYT_RS14040	0.72	+0.1
3,208,673	-		BPHYT_RS14040	0.72	+0.2
3,208,862	+				+0.0
3,208,863	-				-0.2
3,208,863	-				+0.5
3,208,866	-				+0.0
3,208,866	-				-0.4
3,208,893	-				-0.3
3,208,893	-				-0.3
3,209,273	+				+0.4
3,209,274	-				-0.2
3,209,275	+				+1.1
3,209,390	-				-1.3
3,209,390	-				+0.1
3,209,390	-				+0.6
3,209,456	-		BPHYT_RS14050	0.15	-0.7
3,209,555	+		BPHYT_RS14050	0.27	-0.5
3,209,556	-		BPHYT_RS14050	0.27	+0.0