Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12210

Experiment: 36hr PHYTO11 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO11 MOI 1
2,787,146	+		BPHYT_RS12205	0.58	+2.3
2,787,147	-		BPHYT_RS12205	0.58	+0.5
2,787,240	-		BPHYT_RS12205	0.69	+0.7
2,787,296	-		BPHYT_RS12205	0.75	+0.7
2,788,048	+				-1.0
2,788,049	-				-0.8
2,788,049	-				+1.6
2,788,066	+		BPHYT_RS12210	0.11	+0.7
2,788,066	+		BPHYT_RS12210	0.11	+0.3
2,788,066	+		BPHYT_RS12210	0.11	-0.7
2,788,305	+		BPHYT_RS12210	0.27	+2.3
2,788,432	+		BPHYT_RS12210	0.36	-1.4
2,788,478	-		BPHYT_RS12210	0.39	-0.3
2,788,576	-		BPHYT_RS12210	0.46	-0.0
2,788,576	-		BPHYT_RS12210	0.46	+0.3
2,788,576	-		BPHYT_RS12210	0.46	-0.1
2,788,636	+		BPHYT_RS12210	0.50	-0.3
2,788,637	-		BPHYT_RS12210	0.50	-1.7
2,788,637	-		BPHYT_RS12210	0.50	+1.0
2,789,047	+		BPHYT_RS12210	0.79	-2.8
2,789,048	-		BPHYT_RS12210	0.79	-0.2
2,789,053	+		BPHYT_RS12210	0.79	-2.0
2,789,054	-		BPHYT_RS12210	0.79	-0.6
2,789,372	-				-0.8
2,789,425	+		BPHYT_RS12215	0.11	-0.5
2,789,425	+		BPHYT_RS12215	0.11	-1.3
2,789,695	+		BPHYT_RS12215	0.68	+0.1
2,789,695	+		BPHYT_RS12215	0.68	+1.7
2,789,696	-		BPHYT_RS12215	0.68	+0.1
2,789,696	-		BPHYT_RS12215	0.68	+0.5
2,789,704	+		BPHYT_RS12215	0.70	-0.6
2,789,704	+		BPHYT_RS12215	0.70	+0.9
2,789,786	-				+0.3