Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10905

Experiment: 36hr PHYTO11 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10900 and BPHYT_RS10905 are separated by 129 nucleotidesBPHYT_RS10905 and BPHYT_RS10910 are separated by 96 nucleotides BPHYT_RS10900: BPHYT_RS10900 - histidine kinase, at 2,480,414 to 2,481,817 _RS10900 BPHYT_RS10905: BPHYT_RS10905 - membrane protein, at 2,481,947 to 2,482,942 _RS10905 BPHYT_RS10910: BPHYT_RS10910 - glucosyltransferase, at 2,483,039 to 2,484,199 _RS10910 Position (kb) 2481 2482 2483Strain fitness (log2 ratio) -2 -1 0 1at 2481.530 kb on + strand, within BPHYT_RS10900at 2481.878 kb on - strandat 2482.694 kb on - strand, within BPHYT_RS10905at 2482.989 kb on + strandat 2483.030 kb on + strandat 2483.698 kb on + strand, within BPHYT_RS10910at 2483.748 kb on + strand, within BPHYT_RS10910at 2483.748 kb on + strand, within BPHYT_RS10910

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1
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2,481,530 + BPHYT_RS10900 0.79 +0.4
2,481,878 - -1.9
2,482,694 - BPHYT_RS10905 0.75 -0.1
2,482,989 + -1.3
2,483,030 + -0.4
2,483,698 + BPHYT_RS10910 0.57 +0.9
2,483,748 + BPHYT_RS10910 0.61 -0.0
2,483,748 + BPHYT_RS10910 0.61 +0.4

Or see this region's nucleotide sequence