Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10660

Experiment: 36hr PHYTO11 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10655 and BPHYT_RS10660 are separated by 163 nucleotidesBPHYT_RS10660 and BPHYT_RS10665 are separated by 50 nucleotidesBPHYT_RS10665 and BPHYT_RS10670 are separated by 140 nucleotides BPHYT_RS10655: BPHYT_RS10655 - LysR family transcriptional regulator, at 2,427,016 to 2,427,900 _RS10655 BPHYT_RS10660: BPHYT_RS10660 - ferredoxin, at 2,428,064 to 2,429,038 _RS10660 BPHYT_RS10665: BPHYT_RS10665 - muconolactone delta-isomerase, at 2,429,089 to 2,429,379 _RS10665 BPHYT_RS10670: BPHYT_RS10670 - catechol 1,2-dioxygenase, at 2,429,520 to 2,430,428 _RS10670 Position (kb) 2428 2429 2430Strain fitness (log2 ratio) -1 0 1at 2429.008 kb on + strandat 2429.780 kb on + strand, within BPHYT_RS10670

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1
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2,429,008 + -0.7
2,429,780 + BPHYT_RS10670 0.29 -0.8

Or see this region's nucleotide sequence