Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07660

Experiment: 36hr PHYTO11 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07655 and BPHYT_RS07660 are separated by 185 nucleotidesBPHYT_RS07660 and BPHYT_RS07665 are separated by 560 nucleotides BPHYT_RS07655: BPHYT_RS07655 - LysR family transcriptional regulator, at 1,742,504 to 1,743,415 _RS07655 BPHYT_RS07660: BPHYT_RS07660 - sulfonate ABC transporter substrate-binding protein, at 1,743,601 to 1,744,587 _RS07660 BPHYT_RS07665: BPHYT_RS07665 - hypothetical protein, at 1,745,148 to 1,745,699 _RS07665 Position (kb) 1743 1744 1745Strain fitness (log2 ratio) -1 0 1at 1742.685 kb on - strand, within BPHYT_RS07655at 1743.391 kb on - strandat 1744.199 kb on - strand, within BPHYT_RS07660at 1745.414 kb on + strand, within BPHYT_RS07665at 1745.418 kb on + strand, within BPHYT_RS07665at 1745.419 kb on - strand, within BPHYT_RS07665

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1
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1,742,685 - BPHYT_RS07655 0.20 -1.7
1,743,391 - -0.8
1,744,199 - BPHYT_RS07660 0.61 -1.3
1,745,414 + BPHYT_RS07665 0.48 -0.2
1,745,418 + BPHYT_RS07665 0.49 -1.0
1,745,419 - BPHYT_RS07665 0.49 +1.1

Or see this region's nucleotide sequence