Experiment: 36hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02935 and BPHYT_RS02940 are separated by 91 nucleotides BPHYT_RS02940 and BPHYT_RS02945 are separated by 58 nucleotides BPHYT_RS02945 and BPHYT_RS02950 are separated by 43 nucleotides
BPHYT_RS02935: BPHYT_RS02935 - potassium transporter, at 651,875 to 653,878
_RS02935
BPHYT_RS02940: BPHYT_RS02940 - adenine phosphoribosyltransferase, at 653,970 to 654,536
_RS02940
BPHYT_RS02945: BPHYT_RS02945 - lysine transporter LysE, at 654,595 to 655,209
_RS02945
BPHYT_RS02950: BPHYT_RS02950 - NUDIX hydrolase, at 655,253 to 656,116
_RS02950
Position (kb) 654
655
656 Strain fitness (log2 ratio) -2
-1
0
1 at 653.628 kb on + strand, within BPHYT_RS02935 at 653.628 kb on + strand, within BPHYT_RS02935 at 653.930 kb on - strand at 654.140 kb on + strand, within BPHYT_RS02940 at 654.141 kb on - strand, within BPHYT_RS02940 at 654.211 kb on - strand, within BPHYT_RS02940 at 654.261 kb on + strand, within BPHYT_RS02940 at 654.261 kb on + strand, within BPHYT_RS02940 at 654.262 kb on - strand, within BPHYT_RS02940 at 654.282 kb on + strand, within BPHYT_RS02940 at 654.282 kb on + strand, within BPHYT_RS02940 at 654.282 kb on + strand, within BPHYT_RS02940 at 654.282 kb on + strand, within BPHYT_RS02940 at 654.282 kb on + strand, within BPHYT_RS02940 at 654.282 kb on + strand, within BPHYT_RS02940 at 654.282 kb on + strand, within BPHYT_RS02940 at 654.509 kb on + strand at 654.510 kb on - strand at 654.551 kb on + strand at 654.601 kb on - strand at 654.601 kb on - strand at 654.601 kb on - strand at 654.681 kb on + strand, within BPHYT_RS02945 at 654.681 kb on + strand, within BPHYT_RS02945 at 654.832 kb on + strand, within BPHYT_RS02945 at 654.833 kb on - strand, within BPHYT_RS02945 at 655.518 kb on - strand, within BPHYT_RS02950 at 655.556 kb on + strand, within BPHYT_RS02950 at 655.557 kb on - strand, within BPHYT_RS02950 at 655.557 kb on - strand, within BPHYT_RS02950 at 655.598 kb on + strand, within BPHYT_RS02950 at 655.598 kb on + strand, within BPHYT_RS02950 at 655.598 kb on + strand, within BPHYT_RS02950 at 655.624 kb on - strand, within BPHYT_RS02950 at 655.628 kb on + strand, within BPHYT_RS02950 at 655.628 kb on + strand, within BPHYT_RS02950 at 655.892 kb on + strand, within BPHYT_RS02950
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1 remove 653,628 + BPHYT_RS02935 0.87 -1.4 653,628 + BPHYT_RS02935 0.87 -1.2 653,930 - -0.1 654,140 + BPHYT_RS02940 0.30 -0.3 654,141 - BPHYT_RS02940 0.30 -2.7 654,211 - BPHYT_RS02940 0.43 -1.0 654,261 + BPHYT_RS02940 0.51 -0.0 654,261 + BPHYT_RS02940 0.51 -0.9 654,262 - BPHYT_RS02940 0.51 +0.4 654,282 + BPHYT_RS02940 0.55 -0.6 654,282 + BPHYT_RS02940 0.55 -0.5 654,282 + BPHYT_RS02940 0.55 -0.1 654,282 + BPHYT_RS02940 0.55 -0.5 654,282 + BPHYT_RS02940 0.55 +0.1 654,282 + BPHYT_RS02940 0.55 -0.4 654,282 + BPHYT_RS02940 0.55 -0.6 654,509 + -0.0 654,510 - +0.1 654,551 + -0.6 654,601 - +0.1 654,601 - -0.1 654,601 - -1.6 654,681 + BPHYT_RS02945 0.14 -0.5 654,681 + BPHYT_RS02945 0.14 -0.7 654,832 + BPHYT_RS02945 0.39 -0.4 654,833 - BPHYT_RS02945 0.39 -0.4 655,518 - BPHYT_RS02950 0.31 -0.2 655,556 + BPHYT_RS02950 0.35 -0.8 655,557 - BPHYT_RS02950 0.35 -0.2 655,557 - BPHYT_RS02950 0.35 -1.0 655,598 + BPHYT_RS02950 0.40 -0.2 655,598 + BPHYT_RS02950 0.40 -0.8 655,598 + BPHYT_RS02950 0.40 -0.8 655,624 - BPHYT_RS02950 0.43 -0.1 655,628 + BPHYT_RS02950 0.43 +0.8 655,628 + BPHYT_RS02950 0.43 +0.1 655,892 + BPHYT_RS02950 0.74 -0.5
Or see this region's nucleotide sequence