Experiment: 36hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01735 and BPHYT_RS01740 are separated by 104 nucleotides BPHYT_RS01740 and BPHYT_RS01745 overlap by 28 nucleotides BPHYT_RS01745 and BPHYT_RS01750 overlap by 10 nucleotides
BPHYT_RS01735: BPHYT_RS01735 - membrane protein, at 394,367 to 396,268
_RS01735
BPHYT_RS01740: BPHYT_RS01740 - hypothetical protein, at 396,373 to 397,395
_RS01740
BPHYT_RS01745: BPHYT_RS01745 - carbon monoxide dehydrogenase subunit G, at 397,368 to 397,964
_RS01745
BPHYT_RS01750: BPHYT_RS01750 - von Willebrand factor A, at 397,955 to 399,241
_RS01750
Position (kb) 396
397
398 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 395.406 kb on + strand, within BPHYT_RS01735 at 395.406 kb on + strand, within BPHYT_RS01735 at 395.407 kb on - strand, within BPHYT_RS01735 at 395.433 kb on + strand, within BPHYT_RS01735 at 395.433 kb on + strand, within BPHYT_RS01735 at 395.608 kb on - strand, within BPHYT_RS01735 at 395.653 kb on - strand, within BPHYT_RS01735 at 395.751 kb on + strand, within BPHYT_RS01735 at 395.752 kb on - strand, within BPHYT_RS01735 at 395.752 kb on - strand, within BPHYT_RS01735 at 395.752 kb on - strand, within BPHYT_RS01735 at 395.767 kb on + strand, within BPHYT_RS01735 at 396.003 kb on + strand, within BPHYT_RS01735 at 396.051 kb on + strand, within BPHYT_RS01735 at 396.051 kb on + strand, within BPHYT_RS01735 at 396.051 kb on + strand, within BPHYT_RS01735 at 396.051 kb on + strand, within BPHYT_RS01735 at 396.052 kb on - strand, within BPHYT_RS01735 at 396.052 kb on - strand, within BPHYT_RS01735 at 396.085 kb on + strand at 396.085 kb on + strand at 396.172 kb on - strand at 396.289 kb on + strand at 396.289 kb on + strand at 396.312 kb on - strand at 396.531 kb on - strand, within BPHYT_RS01740 at 396.567 kb on + strand, within BPHYT_RS01740 at 396.641 kb on + strand, within BPHYT_RS01740 at 396.642 kb on - strand at 396.766 kb on - strand, within BPHYT_RS01740 at 396.766 kb on - strand, within BPHYT_RS01740 at 396.766 kb on - strand, within BPHYT_RS01740 at 396.806 kb on + strand, within BPHYT_RS01740 at 396.806 kb on + strand, within BPHYT_RS01740 at 396.839 kb on + strand, within BPHYT_RS01740 at 397.037 kb on - strand, within BPHYT_RS01740 at 397.324 kb on + strand at 397.325 kb on - strand at 397.327 kb on + strand at 397.457 kb on + strand, within BPHYT_RS01745 at 397.457 kb on + strand, within BPHYT_RS01745 at 397.457 kb on + strand, within BPHYT_RS01745 at 397.458 kb on - strand, within BPHYT_RS01745 at 397.458 kb on - strand, within BPHYT_RS01745 at 397.458 kb on - strand, within BPHYT_RS01745 at 397.744 kb on + strand, within BPHYT_RS01745 at 397.835 kb on - strand, within BPHYT_RS01745 at 398.058 kb on - strand at 398.062 kb on + strand at 398.062 kb on + strand at 398.063 kb on - strand at 398.160 kb on - strand, within BPHYT_RS01750 at 398.160 kb on - strand, within BPHYT_RS01750 at 398.160 kb on - strand, within BPHYT_RS01750
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1 remove 395,406 + BPHYT_RS01735 0.55 -0.3 395,406 + BPHYT_RS01735 0.55 -0.5 395,407 - BPHYT_RS01735 0.55 -0.1 395,433 + BPHYT_RS01735 0.56 -1.3 395,433 + BPHYT_RS01735 0.56 -0.8 395,608 - BPHYT_RS01735 0.65 +1.5 395,653 - BPHYT_RS01735 0.68 -0.0 395,751 + BPHYT_RS01735 0.73 +1.5 395,752 - BPHYT_RS01735 0.73 -1.2 395,752 - BPHYT_RS01735 0.73 +0.4 395,752 - BPHYT_RS01735 0.73 -2.3 395,767 + BPHYT_RS01735 0.74 -0.2 396,003 + BPHYT_RS01735 0.86 +0.2 396,051 + BPHYT_RS01735 0.89 +0.6 396,051 + BPHYT_RS01735 0.89 +0.0 396,051 + BPHYT_RS01735 0.89 +0.1 396,051 + BPHYT_RS01735 0.89 +0.0 396,052 - BPHYT_RS01735 0.89 +0.4 396,052 - BPHYT_RS01735 0.89 -0.2 396,085 + +2.5 396,085 + -1.2 396,172 - +0.2 396,289 + +3.1 396,289 + -0.9 396,312 - -2.2 396,531 - BPHYT_RS01740 0.15 -0.8 396,567 + BPHYT_RS01740 0.19 -0.2 396,641 + BPHYT_RS01740 0.26 -0.2 396,642 - +1.5 396,766 - BPHYT_RS01740 0.38 -0.2 396,766 - BPHYT_RS01740 0.38 -1.6 396,766 - BPHYT_RS01740 0.38 -0.3 396,806 + BPHYT_RS01740 0.42 -1.2 396,806 + BPHYT_RS01740 0.42 -1.1 396,839 + BPHYT_RS01740 0.46 -1.0 397,037 - BPHYT_RS01740 0.65 -0.5 397,324 + -0.9 397,325 - -0.4 397,327 + -0.8 397,457 + BPHYT_RS01745 0.15 +0.7 397,457 + BPHYT_RS01745 0.15 +1.9 397,457 + BPHYT_RS01745 0.15 +0.0 397,458 - BPHYT_RS01745 0.15 +0.1 397,458 - BPHYT_RS01745 0.15 -0.7 397,458 - BPHYT_RS01745 0.15 -1.8 397,744 + BPHYT_RS01745 0.63 +0.3 397,835 - BPHYT_RS01745 0.78 +0.2 398,058 - +0.5 398,062 + -0.4 398,062 + +0.2 398,063 - +0.4 398,160 - BPHYT_RS01750 0.16 +1.2 398,160 - BPHYT_RS01750 0.16 -0.0 398,160 - BPHYT_RS01750 0.16 -2.0
Or see this region's nucleotide sequence