Experiment: 36hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01640 and BPHYT_RS01645 are separated by 677 nucleotides BPHYT_RS01645 and BPHYT_RS01650 are separated by 190 nucleotides
BPHYT_RS01640: BPHYT_RS01640 - molecular chaperone DnaK, at 372,494 to 372,913
_RS01640
BPHYT_RS01645: BPHYT_RS01645 - cobalamin biosynthesis protein CobW, at 373,591 to 374,679
_RS01645
BPHYT_RS01650: BPHYT_RS01650 - 23S rRNA methyltransferase, at 374,870 to 376,072
_RS01650
Position (kb) 373
374
375 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 372.948 kb on - strand at 372.948 kb on - strand at 372.952 kb on - strand at 372.952 kb on - strand at 372.952 kb on - strand at 373.077 kb on - strand at 373.228 kb on - strand at 373.272 kb on - strand at 373.272 kb on - strand at 373.272 kb on - strand at 373.277 kb on - strand at 373.277 kb on - strand at 373.277 kb on - strand at 373.293 kb on - strand at 373.293 kb on - strand at 373.320 kb on - strand at 373.333 kb on - strand at 373.344 kb on - strand at 373.386 kb on - strand at 373.386 kb on - strand at 373.386 kb on - strand at 373.451 kb on - strand at 373.495 kb on + strand at 373.496 kb on - strand at 373.496 kb on - strand at 373.650 kb on + strand at 373.763 kb on + strand, within BPHYT_RS01645 at 373.764 kb on - strand, within BPHYT_RS01645 at 373.776 kb on + strand, within BPHYT_RS01645 at 373.778 kb on + strand, within BPHYT_RS01645 at 373.778 kb on + strand, within BPHYT_RS01645 at 373.779 kb on - strand, within BPHYT_RS01645 at 373.779 kb on - strand, within BPHYT_RS01645 at 373.799 kb on + strand, within BPHYT_RS01645 at 373.800 kb on - strand, within BPHYT_RS01645 at 373.800 kb on - strand, within BPHYT_RS01645 at 373.981 kb on - strand, within BPHYT_RS01645 at 374.692 kb on + strand at 374.693 kb on - strand at 374.693 kb on - strand at 374.693 kb on - strand at 374.693 kb on - strand at 374.702 kb on + strand at 374.703 kb on - strand at 374.780 kb on + strand at 374.780 kb on + strand at 374.780 kb on + strand at 374.780 kb on + strand at 374.780 kb on + strand at 374.780 kb on + strand at 374.780 kb on + strand at 374.780 kb on + strand at 374.780 kb on + strand at 374.780 kb on + strand at 374.780 kb on + strand at 374.780 kb on + strand at 374.780 kb on + strand at 374.781 kb on - strand at 374.781 kb on - strand at 374.781 kb on - strand at 374.781 kb on - strand at 374.781 kb on - strand at 374.781 kb on - strand at 374.781 kb on - strand at 374.781 kb on - strand at 374.781 kb on - strand at 374.781 kb on - strand at 374.849 kb on + strand at 374.849 kb on + strand at 374.861 kb on + strand at 374.901 kb on + strand at 374.901 kb on + strand at 375.108 kb on + strand, within BPHYT_RS01650 at 375.109 kb on - strand, within BPHYT_RS01650 at 375.109 kb on - strand, within BPHYT_RS01650 at 375.109 kb on - strand, within BPHYT_RS01650 at 375.373 kb on - strand, within BPHYT_RS01650 at 375.447 kb on + strand, within BPHYT_RS01650 at 375.447 kb on + strand, within BPHYT_RS01650 at 375.447 kb on + strand, within BPHYT_RS01650 at 375.447 kb on + strand, within BPHYT_RS01650 at 375.447 kb on + strand, within BPHYT_RS01650 at 375.448 kb on - strand, within BPHYT_RS01650
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1 remove 372,948 - -0.3 372,948 - -0.0 372,952 - -0.3 372,952 - -0.9 372,952 - +0.5 373,077 - +0.4 373,228 - -0.7 373,272 - -1.3 373,272 - -0.6 373,272 - -0.1 373,277 - -0.4 373,277 - -0.8 373,277 - -0.1 373,293 - +0.1 373,293 - +0.1 373,320 - -0.1 373,333 - -0.7 373,344 - -1.5 373,386 - -0.0 373,386 - -0.6 373,386 - -0.8 373,451 - +0.0 373,495 + -1.2 373,496 - +0.2 373,496 - +0.1 373,650 + -0.6 373,763 + BPHYT_RS01645 0.16 +0.2 373,764 - BPHYT_RS01645 0.16 -0.0 373,776 + BPHYT_RS01645 0.17 +0.9 373,778 + BPHYT_RS01645 0.17 -2.0 373,778 + BPHYT_RS01645 0.17 +0.8 373,779 - BPHYT_RS01645 0.17 +0.5 373,779 - BPHYT_RS01645 0.17 -1.0 373,799 + BPHYT_RS01645 0.19 +0.1 373,800 - BPHYT_RS01645 0.19 -1.0 373,800 - BPHYT_RS01645 0.19 +0.1 373,981 - BPHYT_RS01645 0.36 -0.8 374,692 + +0.1 374,693 - -2.5 374,693 - -0.3 374,693 - +0.5 374,693 - -0.3 374,702 + -0.6 374,703 - -1.0 374,780 + -0.6 374,780 + -1.1 374,780 + +0.1 374,780 + -1.6 374,780 + -0.5 374,780 + -1.1 374,780 + -0.1 374,780 + -0.5 374,780 + -2.3 374,780 + +0.0 374,780 + -1.8 374,780 + +2.0 374,780 + -1.0 374,781 - +0.1 374,781 - +0.7 374,781 - +1.5 374,781 - -0.1 374,781 - +0.2 374,781 - +0.8 374,781 - -0.9 374,781 - -0.7 374,781 - -0.3 374,781 - +0.2 374,849 + +1.8 374,849 + -1.2 374,861 + +0.8 374,901 + -0.5 374,901 + -0.5 375,108 + BPHYT_RS01650 0.20 +0.7 375,109 - BPHYT_RS01650 0.20 +0.2 375,109 - BPHYT_RS01650 0.20 +1.2 375,109 - BPHYT_RS01650 0.20 +0.3 375,373 - BPHYT_RS01650 0.42 -0.5 375,447 + BPHYT_RS01650 0.48 +0.1 375,447 + BPHYT_RS01650 0.48 +0.1 375,447 + BPHYT_RS01650 0.48 +2.9 375,447 + BPHYT_RS01650 0.48 +0.5 375,447 + BPHYT_RS01650 0.48 +0.2 375,448 - BPHYT_RS01650 0.48 -0.3
Or see this region's nucleotide sequence