Experiment: 36hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01395 and BPHYT_RS01400 are separated by 692 nucleotides
BPHYT_RS01395: BPHYT_RS01395 - tRNA-Arg, at 318,058 to 318,147
_RS01395
BPHYT_RS01400: BPHYT_RS01400 - hypothetical protein, at 318,840 to 319,229
_RS01400
Position (kb) 318
319
320 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 317.903 kb on - strand at 317.903 kb on - strand at 317.960 kb on - strand at 317.982 kb on - strand at 317.982 kb on - strand at 317.982 kb on - strand at 317.982 kb on - strand at 318.004 kb on - strand at 318.103 kb on - strand, within BPHYT_RS01395 at 318.127 kb on - strand, within BPHYT_RS01395 at 318.127 kb on - strand, within BPHYT_RS01395 at 318.127 kb on - strand, within BPHYT_RS01395 at 318.218 kb on - strand at 318.325 kb on - strand at 318.339 kb on - strand at 318.339 kb on - strand at 318.341 kb on - strand at 318.445 kb on - strand at 318.494 kb on + strand at 318.494 kb on + strand at 318.549 kb on + strand at 318.550 kb on - strand at 318.692 kb on + strand at 318.693 kb on - strand at 318.693 kb on - strand at 318.738 kb on + strand at 318.738 kb on + strand at 318.739 kb on - strand at 318.739 kb on - strand at 318.798 kb on - strand at 318.856 kb on - strand at 318.969 kb on + strand, within BPHYT_RS01400 at 318.969 kb on + strand, within BPHYT_RS01400 at 318.969 kb on + strand, within BPHYT_RS01400 at 318.970 kb on - strand, within BPHYT_RS01400 at 318.970 kb on - strand, within BPHYT_RS01400 at 319.060 kb on + strand, within BPHYT_RS01400 at 319.107 kb on + strand, within BPHYT_RS01400 at 319.107 kb on + strand, within BPHYT_RS01400 at 319.108 kb on - strand, within BPHYT_RS01400 at 319.108 kb on - strand, within BPHYT_RS01400 at 319.111 kb on - strand, within BPHYT_RS01400 at 319.111 kb on - strand, within BPHYT_RS01400 at 319.111 kb on - strand, within BPHYT_RS01400 at 319.113 kb on + strand, within BPHYT_RS01400 at 319.113 kb on + strand, within BPHYT_RS01400 at 319.113 kb on + strand, within BPHYT_RS01400 at 319.113 kb on + strand, within BPHYT_RS01400 at 319.113 kb on + strand, within BPHYT_RS01400 at 319.114 kb on - strand, within BPHYT_RS01400 at 319.116 kb on + strand, within BPHYT_RS01400 at 319.116 kb on + strand, within BPHYT_RS01400 at 319.116 kb on + strand, within BPHYT_RS01400 at 319.116 kb on + strand, within BPHYT_RS01400 at 319.117 kb on - strand, within BPHYT_RS01400 at 319.117 kb on - strand, within BPHYT_RS01400 at 319.117 kb on - strand, within BPHYT_RS01400 at 319.117 kb on - strand, within BPHYT_RS01400 at 319.117 kb on - strand, within BPHYT_RS01400 at 319.232 kb on + strand at 319.233 kb on - strand at 319.233 kb on - strand at 319.233 kb on - strand at 319.305 kb on + strand at 319.305 kb on + strand at 319.306 kb on - strand at 319.308 kb on + strand at 319.308 kb on + strand at 319.308 kb on + strand at 319.308 kb on + strand at 319.309 kb on - strand at 319.309 kb on - strand at 319.320 kb on + strand at 319.321 kb on - strand at 319.321 kb on - strand at 319.362 kb on + strand at 319.401 kb on - strand at 319.408 kb on + strand at 319.408 kb on + strand at 319.408 kb on + strand at 319.408 kb on + strand at 319.409 kb on - strand at 319.409 kb on - strand at 319.409 kb on - strand at 319.409 kb on - strand at 319.540 kb on + strand at 319.540 kb on + strand at 319.541 kb on - strand at 319.541 kb on - strand at 319.541 kb on - strand at 319.541 kb on - strand at 319.541 kb on - strand at 319.543 kb on + strand at 319.544 kb on - strand at 319.628 kb on + strand at 319.628 kb on + strand at 319.628 kb on + strand at 319.683 kb on + strand at 319.683 kb on + strand at 319.683 kb on + strand at 319.683 kb on + strand at 319.683 kb on + strand at 319.684 kb on - strand at 319.715 kb on + strand at 319.723 kb on + strand at 319.723 kb on + strand at 319.723 kb on + strand at 319.823 kb on + strand at 319.823 kb on + strand at 319.823 kb on + strand at 319.824 kb on - strand at 320.022 kb on + strand at 320.022 kb on + strand at 320.022 kb on + strand at 320.022 kb on + strand at 320.022 kb on + strand at 320.023 kb on - strand at 320.026 kb on + strand at 320.027 kb on - strand at 320.027 kb on - strand at 320.027 kb on - strand at 320.027 kb on - strand at 320.030 kb on + strand at 320.031 kb on - strand at 320.031 kb on - strand at 320.031 kb on - strand at 320.031 kb on - strand at 320.188 kb on - strand at 320.188 kb on - strand at 320.188 kb on - strand at 320.188 kb on - strand at 320.191 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1 remove 317,903 - +0.0 317,903 - -0.7 317,960 - +0.4 317,982 - +0.4 317,982 - -0.8 317,982 - -1.2 317,982 - +0.2 318,004 - +0.5 318,103 - BPHYT_RS01395 0.50 -0.5 318,127 - BPHYT_RS01395 0.77 -0.4 318,127 - BPHYT_RS01395 0.77 -0.8 318,127 - BPHYT_RS01395 0.77 +0.4 318,218 - -0.4 318,325 - +0.5 318,339 - +0.4 318,339 - +0.5 318,341 - +1.3 318,445 - -0.9 318,494 + +1.2 318,494 + -0.3 318,549 + +0.4 318,550 - +0.8 318,692 + +0.5 318,693 - +0.2 318,693 - -0.2 318,738 + +0.1 318,738 + +1.0 318,739 - -0.4 318,739 - -0.5 318,798 - -0.4 318,856 - +1.1 318,969 + BPHYT_RS01400 0.33 +0.3 318,969 + BPHYT_RS01400 0.33 -0.2 318,969 + BPHYT_RS01400 0.33 +0.8 318,970 - BPHYT_RS01400 0.33 +0.0 318,970 - BPHYT_RS01400 0.33 +0.5 319,060 + BPHYT_RS01400 0.56 -0.2 319,107 + BPHYT_RS01400 0.68 +0.7 319,107 + BPHYT_RS01400 0.68 -0.7 319,108 - BPHYT_RS01400 0.69 -1.7 319,108 - BPHYT_RS01400 0.69 +0.5 319,111 - BPHYT_RS01400 0.69 +0.6 319,111 - BPHYT_RS01400 0.69 -0.2 319,111 - BPHYT_RS01400 0.69 -0.7 319,113 + BPHYT_RS01400 0.70 -1.0 319,113 + BPHYT_RS01400 0.70 -0.4 319,113 + BPHYT_RS01400 0.70 +1.2 319,113 + BPHYT_RS01400 0.70 -0.7 319,113 + BPHYT_RS01400 0.70 +0.4 319,114 - BPHYT_RS01400 0.70 -0.5 319,116 + BPHYT_RS01400 0.71 +0.6 319,116 + BPHYT_RS01400 0.71 -0.3 319,116 + BPHYT_RS01400 0.71 -0.7 319,116 + BPHYT_RS01400 0.71 +0.9 319,117 - BPHYT_RS01400 0.71 +0.4 319,117 - BPHYT_RS01400 0.71 +0.8 319,117 - BPHYT_RS01400 0.71 +0.3 319,117 - BPHYT_RS01400 0.71 -0.5 319,117 - BPHYT_RS01400 0.71 -0.7 319,232 + -1.1 319,233 - +0.2 319,233 - -0.3 319,233 - +0.8 319,305 + +1.0 319,305 + -1.3 319,306 - -1.7 319,308 + +0.6 319,308 + -0.3 319,308 + +0.1 319,308 + -0.8 319,309 - -0.9 319,309 - +0.5 319,320 + -0.7 319,321 - +0.2 319,321 - +1.1 319,362 + +3.5 319,401 - -0.2 319,408 + +0.1 319,408 + -1.1 319,408 + +0.0 319,408 + -0.4 319,409 - +0.4 319,409 - +0.7 319,409 - +0.1 319,409 - -0.3 319,540 + -0.2 319,540 + -0.2 319,541 - +0.2 319,541 - -0.6 319,541 - +0.2 319,541 - -0.2 319,541 - +0.9 319,543 + -0.8 319,544 - +1.0 319,628 + +0.8 319,628 + +0.9 319,628 + -0.7 319,683 + -0.1 319,683 + +0.3 319,683 + +0.7 319,683 + -0.4 319,683 + -0.6 319,684 - -0.2 319,715 + +0.4 319,723 + -0.7 319,723 + -1.1 319,723 + +0.2 319,823 + -0.5 319,823 + -0.5 319,823 + +0.5 319,824 - -0.4 320,022 + +0.1 320,022 + -0.8 320,022 + -2.9 320,022 + -0.1 320,022 + -0.5 320,023 - -1.2 320,026 + -0.2 320,027 - -0.3 320,027 - -1.5 320,027 - -0.4 320,027 - -0.2 320,030 + -0.2 320,031 - -0.4 320,031 - -0.3 320,031 - +0.4 320,031 - +0.2 320,188 - +0.1 320,188 - +0.9 320,188 - +0.1 320,188 - -0.5 320,191 - +0.3
Or see this region's nucleotide sequence