Experiment: 36hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01385 and BPHYT_RS01390 are separated by 383 nucleotides BPHYT_RS01390 and BPHYT_RS01395 are separated by 281 nucleotides
BPHYT_RS01385: BPHYT_RS01385 - cation ABC transporter permease, at 316,389 to 317,201
_RS01385
BPHYT_RS01390: BPHYT_RS01390 - hypothetical protein, at 317,585 to 317,776
_RS01390
BPHYT_RS01395: BPHYT_RS01395 - tRNA-Arg, at 318,058 to 318,147
_RS01395
Position (kb) 317
318 Strain fitness (log2 ratio) -2
-1
0
1
2 at 316.655 kb on + strand, within BPHYT_RS01385 at 316.655 kb on + strand, within BPHYT_RS01385 at 316.719 kb on + strand, within BPHYT_RS01385 at 316.720 kb on - strand, within BPHYT_RS01385 at 316.741 kb on + strand, within BPHYT_RS01385 at 316.742 kb on - strand, within BPHYT_RS01385 at 316.742 kb on - strand, within BPHYT_RS01385 at 316.942 kb on + strand, within BPHYT_RS01385 at 316.943 kb on - strand, within BPHYT_RS01385 at 317.082 kb on + strand, within BPHYT_RS01385 at 317.082 kb on + strand, within BPHYT_RS01385 at 317.082 kb on + strand, within BPHYT_RS01385 at 317.082 kb on + strand, within BPHYT_RS01385 at 317.083 kb on - strand, within BPHYT_RS01385 at 317.083 kb on - strand, within BPHYT_RS01385 at 317.083 kb on - strand, within BPHYT_RS01385 at 317.083 kb on - strand, within BPHYT_RS01385 at 317.134 kb on + strand at 317.134 kb on + strand at 317.134 kb on + strand at 317.134 kb on + strand at 317.135 kb on - strand at 317.135 kb on - strand at 317.136 kb on + strand at 317.136 kb on + strand at 317.136 kb on + strand at 317.137 kb on - strand at 317.199 kb on + strand at 317.200 kb on - strand at 317.267 kb on + strand at 317.334 kb on + strand at 317.334 kb on + strand at 317.334 kb on + strand at 317.335 kb on - strand at 317.335 kb on - strand at 317.337 kb on + strand at 317.337 kb on - strand at 317.338 kb on - strand at 317.411 kb on + strand at 317.411 kb on + strand at 317.411 kb on + strand at 317.411 kb on + strand at 317.411 kb on + strand at 317.411 kb on + strand at 317.412 kb on - strand at 317.413 kb on + strand at 317.413 kb on + strand at 317.413 kb on + strand at 317.413 kb on + strand at 317.414 kb on - strand at 317.414 kb on - strand at 317.414 kb on - strand at 317.414 kb on - strand at 317.537 kb on - strand at 317.571 kb on + strand at 317.571 kb on + strand at 317.572 kb on - strand at 317.572 kb on - strand at 317.572 kb on - strand at 317.572 kb on - strand at 317.572 kb on - strand at 317.664 kb on - strand, within BPHYT_RS01390 at 317.764 kb on + strand at 317.765 kb on - strand at 317.903 kb on - strand at 317.903 kb on - strand at 317.960 kb on - strand at 317.982 kb on - strand at 317.982 kb on - strand at 317.982 kb on - strand at 317.982 kb on - strand at 318.004 kb on - strand at 318.103 kb on - strand, within BPHYT_RS01395 at 318.127 kb on - strand, within BPHYT_RS01395 at 318.127 kb on - strand, within BPHYT_RS01395 at 318.127 kb on - strand, within BPHYT_RS01395 at 318.218 kb on - strand at 318.325 kb on - strand at 318.339 kb on - strand at 318.339 kb on - strand at 318.341 kb on - strand at 318.445 kb on - strand at 318.494 kb on + strand at 318.494 kb on + strand at 318.549 kb on + strand at 318.550 kb on - strand at 318.692 kb on + strand at 318.693 kb on - strand at 318.693 kb on - strand at 318.738 kb on + strand at 318.738 kb on + strand at 318.739 kb on - strand at 318.739 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1 remove 316,655 + BPHYT_RS01385 0.33 -0.5 316,655 + BPHYT_RS01385 0.33 +0.4 316,719 + BPHYT_RS01385 0.41 -0.8 316,720 - BPHYT_RS01385 0.41 +0.5 316,741 + BPHYT_RS01385 0.43 -0.0 316,742 - BPHYT_RS01385 0.43 +0.5 316,742 - BPHYT_RS01385 0.43 -0.5 316,942 + BPHYT_RS01385 0.68 +2.0 316,943 - BPHYT_RS01385 0.68 -0.7 317,082 + BPHYT_RS01385 0.85 -1.7 317,082 + BPHYT_RS01385 0.85 -1.1 317,082 + BPHYT_RS01385 0.85 -1.3 317,082 + BPHYT_RS01385 0.85 -0.5 317,083 - BPHYT_RS01385 0.85 +0.2 317,083 - BPHYT_RS01385 0.85 -0.3 317,083 - BPHYT_RS01385 0.85 -2.2 317,083 - BPHYT_RS01385 0.85 +0.4 317,134 + -1.3 317,134 + -1.0 317,134 + +2.5 317,134 + -0.4 317,135 - +2.2 317,135 - +0.5 317,136 + +0.2 317,136 + +1.2 317,136 + +2.5 317,137 - -1.1 317,199 + +0.7 317,200 - +0.4 317,267 + -2.0 317,334 + +2.1 317,334 + +1.0 317,334 + -0.4 317,335 - +0.9 317,335 - +0.6 317,337 + -1.1 317,337 - -0.5 317,338 - -0.5 317,411 + -0.2 317,411 + -0.9 317,411 + +0.5 317,411 + +0.2 317,411 + -0.7 317,411 + -0.3 317,412 - -0.5 317,413 + +0.3 317,413 + +0.0 317,413 + +0.6 317,413 + -0.3 317,414 - -1.6 317,414 - -0.9 317,414 - -0.2 317,414 - -0.8 317,537 - -1.0 317,571 + -0.4 317,571 + +1.5 317,572 - -0.1 317,572 - -0.1 317,572 - -0.0 317,572 - -0.1 317,572 - -0.7 317,664 - BPHYT_RS01390 0.41 +0.3 317,764 + +2.5 317,765 - +1.4 317,903 - +0.0 317,903 - -0.7 317,960 - +0.4 317,982 - +0.4 317,982 - -0.8 317,982 - -1.2 317,982 - +0.2 318,004 - +0.5 318,103 - BPHYT_RS01395 0.50 -0.5 318,127 - BPHYT_RS01395 0.77 -0.4 318,127 - BPHYT_RS01395 0.77 -0.8 318,127 - BPHYT_RS01395 0.77 +0.4 318,218 - -0.4 318,325 - +0.5 318,339 - +0.4 318,339 - +0.5 318,341 - +1.3 318,445 - -0.9 318,494 + +1.2 318,494 + -0.3 318,549 + +0.4 318,550 - +0.8 318,692 + +0.5 318,693 - +0.2 318,693 - -0.2 318,738 + +0.1 318,738 + +1.0 318,739 - -0.4 318,739 - -0.5
Or see this region's nucleotide sequence