Experiment: 36hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00975 and BPHYT_RS00980 are separated by 9 nucleotides BPHYT_RS00980 and BPHYT_RS00985 are separated by 21 nucleotides BPHYT_RS00985 and BPHYT_RS00990 overlap by 50 nucleotides
BPHYT_RS00975: BPHYT_RS00975 - arsenic transporter, at 223,682 to 224,743
_RS00975
BPHYT_RS00980: BPHYT_RS00980 - GCN5 family acetyltransferase, at 224,753 to 225,199
_RS00980
BPHYT_RS00985: BPHYT_RS00985 - NADPH-dependent FMN reductase, at 225,221 to 225,985
_RS00985
BPHYT_RS00990: BPHYT_RS00990 - MFS transporter, at 225,936 to 227,198
_RS00990
Position (kb) 225
226 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 224.254 kb on + strand, within BPHYT_RS00975 at 224.280 kb on - strand, within BPHYT_RS00975 at 224.280 kb on - strand, within BPHYT_RS00975 at 224.763 kb on + strand at 224.921 kb on + strand, within BPHYT_RS00980 at 225.218 kb on - strand at 225.329 kb on + strand, within BPHYT_RS00985 at 225.353 kb on + strand, within BPHYT_RS00985 at 225.354 kb on - strand, within BPHYT_RS00985 at 225.354 kb on - strand, within BPHYT_RS00985 at 225.399 kb on + strand, within BPHYT_RS00985 at 225.788 kb on + strand, within BPHYT_RS00985 at 225.788 kb on + strand, within BPHYT_RS00985 at 225.789 kb on - strand, within BPHYT_RS00985 at 225.821 kb on + strand, within BPHYT_RS00985 at 225.823 kb on + strand, within BPHYT_RS00985 at 225.824 kb on - strand, within BPHYT_RS00985 at 226.062 kb on + strand at 226.332 kb on + strand, within BPHYT_RS00990 at 226.332 kb on + strand, within BPHYT_RS00990 at 226.333 kb on - strand, within BPHYT_RS00990 at 226.333 kb on - strand, within BPHYT_RS00990 at 226.377 kb on + strand, within BPHYT_RS00990 at 226.378 kb on - strand, within BPHYT_RS00990 at 226.668 kb on + strand, within BPHYT_RS00990 at 226.765 kb on + strand, within BPHYT_RS00990 at 226.766 kb on - strand, within BPHYT_RS00990
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1 remove 224,254 + BPHYT_RS00975 0.54 -0.1 224,280 - BPHYT_RS00975 0.56 +0.1 224,280 - BPHYT_RS00975 0.56 -0.2 224,763 + -0.3 224,921 + BPHYT_RS00980 0.38 -0.5 225,218 - +0.0 225,329 + BPHYT_RS00985 0.14 -1.9 225,353 + BPHYT_RS00985 0.17 -1.1 225,354 - BPHYT_RS00985 0.17 -1.0 225,354 - BPHYT_RS00985 0.17 -0.3 225,399 + BPHYT_RS00985 0.23 -0.2 225,788 + BPHYT_RS00985 0.74 -0.9 225,788 + BPHYT_RS00985 0.74 -0.6 225,789 - BPHYT_RS00985 0.74 -0.0 225,821 + BPHYT_RS00985 0.78 -0.5 225,823 + BPHYT_RS00985 0.79 -0.2 225,824 - BPHYT_RS00985 0.79 -0.6 226,062 + -1.0 226,332 + BPHYT_RS00990 0.31 -0.3 226,332 + BPHYT_RS00990 0.31 -2.2 226,333 - BPHYT_RS00990 0.31 +0.2 226,333 - BPHYT_RS00990 0.31 -0.4 226,377 + BPHYT_RS00990 0.35 -4.4 226,378 - BPHYT_RS00990 0.35 -1.1 226,668 + BPHYT_RS00990 0.58 -0.2 226,765 + BPHYT_RS00990 0.66 -0.1 226,766 - BPHYT_RS00990 0.66 +0.4
Or see this region's nucleotide sequence